Literature DB >> 11494321

Cryo-electron microscopy as an investigative tool: the ribosome as an example.

J Frank1.   

Abstract

Cryo-electron microscopy allows the visualization of macromolecules in their native state. Combined with techniques of three-dimensional reconstruction, cryo-EM images of single molecules can be used to study macromolecular interactions. The ribosome, a large RNA-protein complex with multiple binding interactions, is an excellent test case illustrating the power of these new techniques. Conformational changes during the binding of tRNA and protein factors to the ribosome can now be studied without the interference of crystal packing. Now that the first X-ray structures of ribosomal subunits have become available, conformational changes observed by cryo-EM in different functional states can be traced back to internal rearrangements of the underlying structural framework. Electron microscopy, X-ray crystallography, and modeling should be used together in the endeavor to understand the functioning of the translational machinery. Copyright 2001 John Wiley & Sons, Inc.

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Year:  2001        PMID: 11494321     DOI: 10.1002/bies.1102

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  13 in total

Review 1.  Ribosomal protection proteins and their mechanism of tetracycline resistance.

Authors:  Sean R Connell; Dobryan M Tracz; Knud H Nierhaus; Diane E Taylor
Journal:  Antimicrob Agents Chemother       Date:  2003-12       Impact factor: 5.191

2.  Protein synthesis by single ribosomes.

Authors:  Francesco Vanzi; Serguei Vladimirov; Charlotte R Knudsen; Yale E Goldman; Barry S Cooperman
Journal:  RNA       Date:  2003-10       Impact factor: 4.942

3.  RNA backbone is rotameric.

Authors:  Laura J W Murray; W Bryan Arendall; David C Richardson; Jane S Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-11       Impact factor: 11.205

4.  Orientation Determination of Cryo-EM Images Using Least Unsquared Deviations.

Authors:  Lanhui Wang; Amit Singer; Zaiwen Wen
Journal:  SIAM J Imaging Sci       Date:  2013-12-03       Impact factor: 2.867

5.  Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.

Authors:  Jhih-Wei Chu; Gregory A Voth
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

6.  Selective detection of peptide-oligonucleotide heteroconjugates utilizing capillary HPLC-ICPMS.

Authors:  Brittany Catron; Joseph A Caruso; Patrick A Limbach
Journal:  J Am Soc Mass Spectrom       Date:  2012-03-27       Impact factor: 3.109

7.  Bioinformatics analysis of experimentally determined protein complexes in the yeast Saccharomyces cerevisiae.

Authors:  Zoltán Dezso; Zoltán N Oltvai; Albert-László Barabási
Journal:  Genome Res       Date:  2003-10-14       Impact factor: 9.043

8.  Monolithic microfluidic mixing-spraying devices for time-resolved cryo-electron microscopy.

Authors:  Zonghuan Lu; Tanvir R Shaikh; David Barnard; Xing Meng; Hisham Mohamed; Aymen Yassin; Carmen A Mannella; Rajendra K Agrawal; Toh-Ming Lu; Terence Wagenknecht
Journal:  J Struct Biol       Date:  2009-08-14       Impact factor: 2.867

9.  Ribosomal proteins and colorectal cancer.

Authors:  Mao-De Lai; Jing Xu
Journal:  Curr Genomics       Date:  2007-03       Impact factor: 2.236

10.  Application of fractional mass for the identification of peptide-oligonucleotide cross-links by mass spectrometry.

Authors:  Soheil Pourshahian; Patrick A Limbach
Journal:  J Mass Spectrom       Date:  2008-08       Impact factor: 1.982

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