Literature DB >> 19666586

Single-molecule analysis reveals that the lagging strand increases replisome processivity but slows replication fork progression.

Nina Y Yao1, Roxana E Georgescu, Jeff Finkelstein, Michael E O'Donnell.   

Abstract

Single-molecule techniques are developed to examine mechanistic features of individual E. coli replisomes during synthesis of long DNA molecules. We find that single replisomes exhibit constant rates of fork movement, but the rates of different replisomes vary over a surprisingly wide range. Interestingly, lagging strand synthesis decreases the rate of the leading strand, suggesting that lagging strand operations exert a drag on replication fork progression. The opposite is true for processivity. The lagging strand significantly increases the processivity of the replisome, possibly reflecting the increased grip to DNA provided by 2 DNA polymerases anchored to sliding clamps on both the leading and lagging strands.

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Year:  2009        PMID: 19666586      PMCID: PMC2726342          DOI: 10.1073/pnas.0906157106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  28 in total

1.  The Escherichia coli preprimosome and DNA B helicase can form replication forks that move at the same rate.

Authors:  M Mok; K J Marians
Journal:  J Biol Chem       Date:  1987-12-05       Impact factor: 5.157

2.  DNA primase acts as a molecular brake in DNA replication.

Authors:  Jong-Bong Lee; Richard K Hite; Samir M Hamdan; X Sunney Xie; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

3.  Organized arrays of individual DNA molecules tethered to supported lipid bilayers.

Authors:  Annette Granéli; Caitlyn C Yeykal; Tekkatte Krishnamurthy Prasad; Eric C Greene
Journal:  Langmuir       Date:  2006-01-03       Impact factor: 3.882

4.  The energy landscapes and motions of proteins.

Authors:  H Frauenfelder; S G Sligar; P G Wolynes
Journal:  Science       Date:  1991-12-13       Impact factor: 47.728

5.  Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase.

Authors:  Chiara Indiani; Lance D Langston; Olga Yurieva; Myron F Goodman; Mike O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

Review 6.  Chromosomal replicases as asymmetric dimers: studies of subunit arrangement and functional consequences.

Authors:  Charles S McHenry
Journal:  Mol Microbiol       Date:  2003-09       Impact factor: 3.501

7.  Trading places on DNA--a three-point switch underlies primer handoff from primase to the replicative DNA polymerase.

Authors:  A Yuzhakov; Z Kelman; M O'Donnell
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

8.  An explanation for lagging strand replication: polymerase hopping among DNA sliding clamps.

Authors:  P T Stukenberg; J Turner; M O'Donnell
Journal:  Cell       Date:  1994-09-09       Impact factor: 41.582

9.  Efficient in vitro replication of double-stranded DNA templates by a purified T4 bacteriophage replication system.

Authors:  N K Sinha; C F Morris; B M Alberts
Journal:  J Biol Chem       Date:  1980-05-10       Impact factor: 5.157

10.  Real-time single-molecule observation of rolling-circle DNA replication.

Authors:  Nathan A Tanner; Joseph J Loparo; Samir M Hamdan; Slobodan Jergic; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2009-01-20       Impact factor: 16.971

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  49 in total

Review 1.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

2.  Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.

Authors:  Mohamed M Elshenawy; Slobodan Jergic; Zhi-Qiang Xu; Mohamed A Sobhy; Masateru Takahashi; Aaron J Oakley; Nicholas E Dixon; Samir M Hamdan
Journal:  Nature       Date:  2015-08-31       Impact factor: 49.962

3.  Insights into Okazaki fragment synthesis by the T4 replisome: the fate of lagging-strand holoenzyme components and their influence on Okazaki fragment size.

Authors:  Danqi Chen; Hongjun Yue; Michelle M Spiering; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2013-05-31       Impact factor: 5.157

Review 4.  Replication-fork dynamics.

Authors:  Karl E Duderstadt; Rodrigo Reyes-Lamothe; Antoine M van Oijen; David J Sherratt
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

Review 5.  High-throughput single-molecule studies of protein-DNA interactions.

Authors:  Aaron D Robison; Ilya J Finkelstein
Journal:  FEBS Lett       Date:  2014-05-21       Impact factor: 4.124

6.  Bacterial and Eukaryotic Replisome Machines.

Authors:  Nina Yao; Mike O'Donnell
Journal:  JSM Biochem Mol Biol       Date:  2016-05-30

7.  Recycling of single-stranded DNA-binding protein by the bacterial replisome.

Authors:  Lisanne M Spenkelink; Jacob S Lewis; Slobodan Jergic; Zhi-Qiang Xu; Andrew Robinson; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

8.  Protein-DNA complexes are the primary sources of replication fork pausing in Escherichia coli.

Authors:  Milind K Gupta; Colin P Guy; Joseph T P Yeeles; John Atkinson; Hazel Bell; Robert G Lloyd; Kenneth J Marians; Peter McGlynn
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-15       Impact factor: 11.205

Review 9.  Bacterial replication, transcription and translation: mechanistic insights from single-molecule biochemical studies.

Authors:  Andrew Robinson; Antoine M van Oijen
Journal:  Nat Rev Microbiol       Date:  2013-04-03       Impact factor: 60.633

Review 10.  New insights into replisome fluidity during chromosome replication.

Authors:  Isabel Kurth; Mike O'Donnell
Journal:  Trends Biochem Sci       Date:  2012-11-12       Impact factor: 13.807

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