Literature DB >> 26322585

Replisome speed determines the efficiency of the Tus-Ter replication termination barrier.

Mohamed M Elshenawy1, Slobodan Jergic2, Zhi-Qiang Xu2, Mohamed A Sobhy1, Masateru Takahashi1, Aaron J Oakley2, Nicholas E Dixon2, Samir M Hamdan1.   

Abstract

In all domains of life, DNA synthesis occurs bidirectionally from replication origins. Despite variable rates of replication fork progression, fork convergence often occurs at specific sites. Escherichia coli sets a 'replication fork trap' that allows the first arriving fork to enter but not to leave the terminus region. The trap is set by oppositely oriented Tus-bound Ter sites that block forks on approach from only one direction. However, the efficiency of fork blockage by Tus-Ter does not exceed 50% in vivo despite its apparent ability to almost permanently arrest replication forks in vitro. Here we use data from single-molecule DNA replication assays and structural studies to show that both polarity and fork-arrest efficiency are determined by a competition between rates of Tus displacement and rearrangement of Tus-Ter interactions that leads to blockage of slower moving replisomes by two distinct mechanisms. To our knowledge this is the first example where intrinsic differences in rates of individual replisomes have different biological outcomes.

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Year:  2015        PMID: 26322585     DOI: 10.1038/nature14866

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  33 in total

1.  Interaction of the Escherichia coli replication terminator protein (Tus) with DNA: a model derived from DNA-binding studies of mutant proteins by surface plasmon resonance.

Authors:  C Neylon; S E Brown; A V Kralicek; C S Miles; C A Love; N E Dixon
Journal:  Biochemistry       Date:  2000-10-03       Impact factor: 3.162

Review 2.  Replication termination in Escherichia coli: structure and antihelicase activity of the Tus-Ter complex.

Authors:  Cameron Neylon; Andrew V Kralicek; Thomas M Hill; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

3.  DNA primase acts as a molecular brake in DNA replication.

Authors:  Jong-Bong Lee; Richard K Hite; Samir M Hamdan; X Sunney Xie; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2006-02-02       Impact factor: 49.962

Review 4.  Random and site-specific replication termination.

Authors:  Jacob Z Dalgaard; Trevor Eydmann; Milana Koulintchenko; Suha Sayrac; Sonya Vengrova; Tomoko Yamada-Inagawa
Journal:  Methods Mol Biol       Date:  2009

5.  A molecular mousetrap determines polarity of termination of DNA replication in E. coli.

Authors:  Mark D Mulcair; Patrick M Schaeffer; Aaron J Oakley; Hannah F Cross; Cameron Neylon; Thomas M Hill; Nicholas E Dixon
Journal:  Cell       Date:  2006-06-30       Impact factor: 41.582

6.  A direct proofreader-clamp interaction stabilizes the Pol III replicase in the polymerization mode.

Authors:  Slobodan Jergic; Nicholas P Horan; Mohamed M Elshenawy; Claire E Mason; Thitima Urathamakul; Kiyoshi Ozawa; Andrew Robinson; Joris M H Goudsmits; Yao Wang; Xuefeng Pan; Jennifer L Beck; Antoine M van Oijen; Thomas Huber; Samir M Hamdan; Nicholas E Dixon
Journal:  EMBO J       Date:  2013-02-22       Impact factor: 11.598

7.  Coupling of a replicative polymerase and helicase: a tau-DnaB interaction mediates rapid replication fork movement.

Authors:  S Kim; H G Dallmann; C S McHenry; K J Marians
Journal:  Cell       Date:  1996-02-23       Impact factor: 41.582

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

9.  Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis.

Authors:  Samir M Hamdan; Joseph J Loparo; Masateru Takahashi; Charles C Richardson; Antoine M van Oijen
Journal:  Nature       Date:  2008-11-23       Impact factor: 49.962

10.  Real-time single-molecule observation of rolling-circle DNA replication.

Authors:  Nathan A Tanner; Joseph J Loparo; Samir M Hamdan; Slobodan Jergic; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2009-01-20       Impact factor: 16.971

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  16 in total

1.  Probing molecular choreography through single-molecule biochemistry.

Authors:  Antoine M van Oijen; Nicholas E Dixon
Journal:  Nat Struct Mol Biol       Date:  2015-12       Impact factor: 15.369

Review 2.  Rescuing Replication from Barriers: Mechanistic Insights from Single-Molecule Studies.

Authors:  Bo Sun
Journal:  Mol Cell Biol       Date:  2019-04-30       Impact factor: 4.272

Review 3.  A structural view of bacterial DNA replication.

Authors:  Aaron J Oakley
Journal:  Protein Sci       Date:  2019-04-17       Impact factor: 6.725

Review 4.  A mechanistic study of helicases with magnetic traps.

Authors:  Samar Hodeib; Saurabh Raj; Maria Manosas; Weiting Zhang; Debjani Bagchi; Bertrand Ducos; Francesca Fiorini; Joanne Kanaan; Hervé Le Hir; Jean-François Allemand; David Bensimon; Vincent Croquette
Journal:  Protein Sci       Date:  2017-06-13       Impact factor: 6.725

5.  Single molecule high-throughput footprinting of small and large DNA ligands.

Authors:  Maria Manosas; Joan Camunas-Soler; Vincent Croquette; Felix Ritort
Journal:  Nat Commun       Date:  2017-08-21       Impact factor: 14.919

Review 6.  Xer Site Specific Recombination: Double and Single Recombinase Systems.

Authors:  Fabio Castillo; Amal Benmohamed; George Szatmari
Journal:  Front Microbiol       Date:  2017-03-20       Impact factor: 5.640

7.  Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea.

Authors:  Masateru Takahashi; Etsuko Takahashi; Luay I Joudeh; Monica Marini; Gobind Das; Mohamed M Elshenawy; Anastassja Akal; Kosuke Sakashita; Intikhab Alam; Muhammad Tehseen; Mohamed A Sobhy; Ulrich Stingl; Jasmeen S Merzaban; Enzo Di Fabrizio; Samir M Hamdan
Journal:  FASEB J       Date:  2018-01-24       Impact factor: 5.191

8.  Rad51 recruitment and exclusion of non-homologous end joining during homologous recombination at a Tus/Ter mammalian replication fork barrier.

Authors:  Nicholas A Willis; Arvind Panday; Erin E Duffey; Ralph Scully
Journal:  PLoS Genet       Date:  2018-07-19       Impact factor: 5.917

9.  Replication termination without a replication fork trap.

Authors:  Elisa Galli; Jean-Luc Ferat; Jean-Michel Desfontaines; Marie-Eve Val; Ole Skovgaard; François-Xavier Barre; Christophe Possoz
Journal:  Sci Rep       Date:  2019-06-05       Impact factor: 4.379

Review 10.  Replication Termination: Containing Fork Fusion-Mediated Pathologies in Escherichia coli.

Authors:  Juachi U Dimude; Sarah L Midgley-Smith; Monja Stein; Christian J Rudolph
Journal:  Genes (Basel)       Date:  2016-07-25       Impact factor: 4.096

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