Literature DB >> 19279203

Translesion DNA polymerases remodel the replisome and alter the speed of the replicative helicase.

Chiara Indiani1, Lance D Langston, Olga Yurieva, Myron F Goodman, Mike O'Donnell.   

Abstract

All cells contain specialized translesion DNA polymerases that replicate past sites of DNA damage. We find that Escherichia coli translesion DNA polymerase II (Pol II) and polymerase IV (Pol IV) function with DnaB helicase and regulate its rate of unwinding, slowing it to as little as 1 bp/s. Furthermore, Pol II and Pol IV freely exchange with the polymerase III (Pol III) replicase on the beta-clamp and function with DnaB helicase to form alternative replisomes, even before Pol III stalls at a lesion. DNA damage-induced levels of Pol II and Pol IV dominate the clamp, slowing the helicase and stably maintaining the architecture of the replication machinery while keeping the fork moving. We propose that these dynamic actions provide additional time for normal excision repair of lesions before the replication fork reaches them and also enable the appropriate translesion polymerase to sample each lesion as it is encountered.

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Year:  2009        PMID: 19279203      PMCID: PMC2654394          DOI: 10.1073/pnas.0901403106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Molecular mechanisms of the functional coupling of the helicase (gp41) and polymerase (gp43) of bacteriophage T4 within the DNA replication fork.

Authors:  E Delagoutte; P H von Hippel
Journal:  Biochemistry       Date:  2001-04-10       Impact factor: 3.162

2.  The beta clamp targets DNA polymerase IV to DNA and strongly increases its processivity.

Authors:  J Wagner; S Fujii; P Gruz; T Nohmi; R P Fuchs
Journal:  EMBO Rep       Date:  2000-12       Impact factor: 8.807

3.  tau binds and organizes Escherichia coli replication proteins through distinct domains. Domain IV, located within the unique C terminus of tau, binds the replication fork, helicase, DnaB.

Authors:  D Gao; C S McHenry
Journal:  J Biol Chem       Date:  2000-11-14       Impact factor: 5.157

4.  Homogeneous expression of the P(BAD) promoter in Escherichia coli by constitutive expression of the low-affinity high-capacity AraE transporter.

Authors:  A Khlebnikov; K A Datsenko; T Skaug; B L Wanner; J D Keasling
Journal:  Microbiology       Date:  2001-12       Impact factor: 2.777

5.  The processivity factor beta controls DNA polymerase IV traffic during spontaneous mutagenesis and translesion synthesis in vivo.

Authors:  Nathalie Lenne-Samuel; Jérôme Wagner; Hélène Etienne; Robert P P Fuchs
Journal:  EMBO Rep       Date:  2001-12-19       Impact factor: 8.807

6.  Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro.

Authors:  Kumiko Higuchi; Tsutomu Katayama; Shigenori Iwai; Masumi Hidaka; Takashi Horiuchi; Hisaji Maki
Journal:  Genes Cells       Date:  2003-05       Impact factor: 1.891

7.  Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis.

Authors:  M Tang; P Pham; X Shen; J S Taylor; M O'Donnell; R Woodgate; M F Goodman
Journal:  Nature       Date:  2000-04-27       Impact factor: 49.962

8.  Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli.

Authors:  S R Kim; K Matsui; M Yamada; P Gruz; T Nohmi
Journal:  Mol Genet Genomics       Date:  2001-10       Impact factor: 3.291

9.  A universal protein-protein interaction motif in the eubacterial DNA replication and repair systems.

Authors:  B P Dalrymple; K Kongsuwan; G Wijffels; N E Dixon; P A Jennings
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-25       Impact factor: 11.205

10.  Comparative gene expression profiles following UV exposure in wild-type and SOS-deficient Escherichia coli.

Authors:  J Courcelle; A Khodursky; B Peter; P O Brown; P C Hanawalt
Journal:  Genetics       Date:  2001-05       Impact factor: 4.562

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  70 in total

Review 1.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

2.  Escherichia coli DNA polymerase IV (Pol IV), but not Pol II, dynamically switches with a stalled Pol III* replicase.

Authors:  Justin M H Heltzel; Robert W Maul; David W Wolff; Mark D Sutton
Journal:  J Bacteriol       Date:  2012-04-27       Impact factor: 3.490

3.  dnaX36 Mutator of Escherichia coli: effects of the {tau} subunit of the DNA polymerase III holoenzyme on chromosomal DNA replication fidelity.

Authors:  Damian Gawel; Piotr Jonczyk; Iwona J Fijalkowska; Roel M Schaaper
Journal:  J Bacteriol       Date:  2010-10-29       Impact factor: 3.490

4.  The SMC-like protein complex SbcCD enhances DNA polymerase IV-dependent spontaneous mutation in Escherichia coli.

Authors:  Kimberly A M Storvik; Patricia L Foster
Journal:  J Bacteriol       Date:  2010-12-03       Impact factor: 3.490

5.  DnaB helicase activity is modulated by DNA geometry and force.

Authors:  Noah Ribeck; Daniel L Kaplan; Irina Bruck; Omar A Saleh
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

6.  The use of modified and non-natural nucleotides provide unique insights into pro-mutagenic replication catalyzed by polymerase eta.

Authors:  Jung-Suk Choi; Anvesh Dasari; Peter Hu; Stephen J Benkovic; Anthony J Berdis
Journal:  Nucleic Acids Res       Date:  2015-12-29       Impact factor: 16.971

7.  Shifting replication between IInd, IIIrd, and IVth gears.

Authors:  Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-08       Impact factor: 11.205

Review 8.  Replication-fork dynamics.

Authors:  Karl E Duderstadt; Rodrigo Reyes-Lamothe; Antoine M van Oijen; David J Sherratt
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

9.  Fate of the replisome following arrest by UV-induced DNA damage in Escherichia coli.

Authors:  H Arthur Jeiranian; Brandy J Schalow; Charmain T Courcelle; Justin Courcelle
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-25       Impact factor: 11.205

10.  A ΔdinB mutation that sensitizes Escherichia coli to the lethal effects of UV- and X-radiation.

Authors:  Mei-Chong W Lee; Magdalena Franco; Doris M Vargas; Deborah A Hudman; Steven J White; Robert G Fowler; Neil J Sargentini
Journal:  Mutat Res       Date:  2014-03-20       Impact factor: 2.433

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