Literature DB >> 19654762

Signal-to-noise and radiation exposure considerations in conventional and diffraction x-ray microscopy.

Xiaojing Huang1, Huijie Miao, Jan Steinbrener, Johanna Nelson, David Shapiro, Andrew Stewart, Joshua Turner, Chris Jacobsen.   

Abstract

Using a signal-to-noise ratio estimation based on correlations between multiple simulated images, we compare the dose efficiency of two soft x-ray imaging systems: incoherent brightfield imaging using zone plate optics in a transmission x-ray microscope (TXM), and x-ray diffraction microscopy (XDM) where an image is reconstructed from the far-field coherent diffraction pattern. In XDM one must computationally phase weak diffraction signals; in TXM one suffers signal losses due to the finite numerical aperture and efficiency of the optics. In simulations with objects representing isolated cells such as yeast, we find that XDM has the potential for delivering equivalent resolution images using fewer photons. This can be an important advantage for studying radiation-sensitive biological and soft matter specimens.

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Year:  2009        PMID: 19654762      PMCID: PMC2897706          DOI: 10.1364/oe.17.013541

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  20 in total

1.  Diffractive imaging of nonperiodic materials with future coherent X-ray sources.

Authors:  Qun Shen; Ivan Bazarov; Pierre Thibault
Journal:  J Synchrotron Radiat       Date:  2004-08-17       Impact factor: 2.616

2.  Wavelength choice for soft x-ray laser holography of biological samples.

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Journal:  Appl Opt       Date:  1989-08-15       Impact factor: 1.980

3.  Reconstruction of a yeast cell from X-ray diffraction data.

Authors:  Pierre Thibault; Veit Elser; Chris Jacobsen; David Shapiro; David Sayre
Journal:  Acta Crystallogr A       Date:  2006-06-21       Impact factor: 2.290

4.  High-resolution scanning x-ray diffraction microscopy.

Authors:  Pierre Thibault; Martin Dierolf; Andreas Menzel; Oliver Bunk; Christian David; Franz Pfeiffer
Journal:  Science       Date:  2008-07-18       Impact factor: 47.728

5.  X-ray microscopy with synchrotron radiation.

Authors:  B Niemann; D Rudolph; G Schmahl
Journal:  Appl Opt       Date:  1976-08-01       Impact factor: 1.980

6.  Reconstruction of an object from the modulus of its Fourier transform.

Authors:  J R Fienup
Journal:  Opt Lett       Date:  1978-07-01       Impact factor: 3.776

Review 7.  Soft X-ray microscopes and their biological applications.

Authors:  J Kirz; C Jacobsen; M Howells
Journal:  Q Rev Biophys       Date:  1995-02       Impact factor: 5.318

8.  Cryo X-ray microscopy with high spatial resolution in amplitude and phase contrast.

Authors:  G Schneider
Journal:  Ultramicroscopy       Date:  1998-11       Impact factor: 2.689

9.  Transmission microscropy of unmodified biological materials: comparative radiation dosages with electrons and ultrasoft x-ray photons.

Authors:  D Sayre; J Kirz; R Feder; D M Kim; E Spiller
Journal:  Ultramicroscopy       Date:  1977-08       Impact factor: 2.689

10.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

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  17 in total

1.  3D X-Ray Imaging of Continuous Objects beyond the Depth of Focus Limit.

Authors:  M A Gilles; Y S G Nashed; M DU; C Jacobsen; S M Wild
Journal:  Optica       Date:  2018-09-20       Impact factor: 11.104

2.  Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae.

Authors:  Junjing Deng; David J Vine; Si Chen; Youssef S G Nashed; Qiaoling Jin; Nicholas W Phillips; Tom Peterka; Rob Ross; Stefan Vogt; Chris J Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-09       Impact factor: 11.205

3.  Nanoscale x-ray imaging of circuit features without wafer etching.

Authors:  Junjing Deng; Young Pyo Hong; Si Chen; Youssef S G Nashed; Tom Peterka; Anthony J F Levi; John Damoulakis; Sayan Saha; Travis Eiles; Chris Jacobsen
Journal:  Phys Rev B       Date:  2017-03-24       Impact factor: 4.036

4.  High-resolution x-ray diffraction microscopy of specifically labeled yeast cells.

Authors:  Johanna Nelson; Xiaojing Huang; Jan Steinbrener; David Shapiro; Janos Kirz; Stefano Marchesini; Aaron M Neiman; Joshua J Turner; Chris Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

5.  Soft X-ray diffraction microscopy of a frozen hydrated yeast cell.

Authors:  Xiaojing Huang; Johanna Nelson; Janos Kirz; Enju Lima; Stefano Marchesini; Huijie Miao; Aaron M Neiman; David Shapiro; Jan Steinbrener; Andrew Stewart; Joshua J Turner; Chris Jacobsen
Journal:  Phys Rev Lett       Date:  2009-11-05       Impact factor: 9.161

6.  Anti-contamination device for cryogenic soft X-ray diffraction microscopy.

Authors:  Xiaojing Huang; Huijie Miao; Johanna Nelson; Joshua Turner; Jan Steinbrener; David Shapiro; Janos Kirz; Chris Jacobsen
Journal:  Nucl Instrum Methods Phys Res A       Date:  2011-05-11       Impact factor: 1.455

7.  Data preparation and evaluation techniques for x-ray diffraction microscopy.

Authors:  Jan Steinbrener; Johanna Nelson; Xiaojing Huang; Stefano Marchesini; David Shapiro; Joshua J Turner; Chris Jacobsen
Journal:  Opt Express       Date:  2010-08-30       Impact factor: 3.894

8.  Relative merits and limiting factors for x-ray and electron microscopy of thick, hydrated organic materials.

Authors:  Ming Du; Chris Jacobsen
Journal:  Ultramicroscopy       Date:  2017-10-07       Impact factor: 2.689

9.  Three-dimensional single-cell imaging with X-ray waveguides in the holographic regime.

Authors:  Martin Krenkel; Mareike Toepperwien; Frauke Alves; Tim Salditt
Journal:  Acta Crystallogr A Found Adv       Date:  2017-06-29       Impact factor: 2.290

10.  Single-pulse enhanced coherent diffraction imaging of bacteria with an X-ray free-electron laser.

Authors:  Jiadong Fan; Zhibin Sun; Yaling Wang; Jaehyun Park; Sunam Kim; Marcus Gallagher-Jones; Yoonhee Kim; Changyong Song; Shengkun Yao; Jian Zhang; Jianhua Zhang; Xiulan Duan; Kensuke Tono; Makina Yabashi; Tetsuya Ishikawa; Chunhai Fan; Yuliang Zhao; Zhifang Chai; Xueyun Gao; Thomas Earnest; Huaidong Jiang
Journal:  Sci Rep       Date:  2016-09-23       Impact factor: 4.379

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