Literature DB >> 30406160

3D X-Ray Imaging of Continuous Objects beyond the Depth of Focus Limit.

M A Gilles1,2, Y S G Nashed1, M DU3, C Jacobsen4,5,6, S M Wild1.   

Abstract

X-ray ptychography is becoming the standard method for sub-30 nm imaging of thick extended samples. Available algorithms and computing power have traditionally restricted sample reconstruction to 2D slices. We build on recent progress in optimization algorithms and high performance computing to solve the ptychographic phase retrieval problem directly in 3D. Our approach addresses samples that do not fit entirely within the depth of focus of the imaging system. Such samples pose additional challenges because of internal diffraction effects within the sample. We demonstrate our approach on a computational sample modeled with 17 million complex variables.

Entities:  

Keywords:  (110.1758) Computational imaging; (180.6900) Three-dimensional microscopy; (340.7440) X-ray imaging

Year:  2018        PMID: 30406160      PMCID: PMC6217975          DOI: 10.1364/OPTICA.5.001078

Source DB:  PubMed          Journal:  Optica            Impact factor:   11.104


  37 in total

1.  Ptychographic X-ray computed tomography at the nanoscale.

Authors:  Martin Dierolf; Andreas Menzel; Pierre Thibault; Philipp Schneider; Cameron M Kewish; Roger Wepf; Oliver Bunk; Franz Pfeiffer
Journal:  Nature       Date:  2010-09-23       Impact factor: 49.962

2.  Effectiveness of iterative algorithms in recovering phase in the presence of noise.

Authors:  Garth Williams; Mark Pfeifer; Ivan Vartanyants; Ian Robinson
Journal:  Acta Crystallogr A       Date:  2006-12-19       Impact factor: 2.290

3.  Phase retrieval with transverse translation diversity: a nonlinear optimization approach.

Authors:  Manuel Guizar-Sicairos; James R Fienup
Journal:  Opt Express       Date:  2008-05-12       Impact factor: 3.894

4.  Continuous scanning mode for ptychography.

Authors:  Jesse N Clark; Xiaojing Huang; Ross J Harder; Ian K Robinson
Journal:  Opt Lett       Date:  2014-10-15       Impact factor: 3.776

5.  XDesign: an open-source software package for designing X-ray imaging phantoms and experiments.

Authors:  Daniel J Ching; Dogˇa Gürsoy
Journal:  J Synchrotron Radiat       Date:  2017-02-21       Impact factor: 2.616

6.  Dynamic imaging using ptychography.

Authors:  Jesse N Clark; Xiaojing Huang; Ross J Harder; Ian K Robinson
Journal:  Phys Rev Lett       Date:  2014-03-18       Impact factor: 9.161

7.  Ptychographic microscope for three-dimensional imaging.

Authors:  T M Godden; R Suman; M J Humphry; J M Rodenburg; A M Maiden
Journal:  Opt Express       Date:  2014-05-19       Impact factor: 3.894

8.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

9.  TomoPy: a framework for the analysis of synchrotron tomographic data.

Authors:  Dogˇa Gürsoy; Francesco De Carlo; Xianghui Xiao; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2014-08-01       Impact factor: 2.616

10.  Multi-slice ptychographic tomography.

Authors:  Peng Li; Andrew Maiden
Journal:  Sci Rep       Date:  2018-02-01       Impact factor: 4.379

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  6 in total

1.  Using automatic differentiation as a general framework for ptychographic reconstruction.

Authors:  Saugat Kandel; S Maddali; Marc Allain; Stephan O Hruszkewycz; Chris Jacobsen; Youssef S G Nashed
Journal:  Opt Express       Date:  2019-06-24       Impact factor: 3.894

2.  Adorym: a multi-platform generic X-ray image reconstruction framework based on automatic differentiation.

Authors:  Ming Du; Saugat Kandel; Junjing Deng; Xiaojing Huang; Arnaud Demortiere; Tuan Tu Nguyen; Remi Tucoulou; Vincent De Andrade; Qiaoling Jin; Chris Jacobsen
Journal:  Opt Express       Date:  2021-03-29       Impact factor: 3.894

3.  Three dimensions, two microscopes, one code: Automatic differentiation for x-ray nanotomography beyond the depth of focus limit.

Authors:  Ming Du; Youssef S G Nashed; Saugat Kandel; Doğa Gürsoy; Chris Jacobsen
Journal:  Sci Adv       Date:  2020-03-27       Impact factor: 14.136

4.  The achievable resolution for X-ray imaging of cells and other soft biological material.

Authors:  Colin Nave
Journal:  IUCrJ       Date:  2020-03-07       Impact factor: 4.769

Review 5.  Upscaling X-ray nanoimaging to macroscopic specimens.

Authors:  Ming Du; Zichao Wendy Di; Doǧa Gürsoy; R Patrick Xian; Yevgenia Kozorovitskiy; Chris Jacobsen
Journal:  J Appl Crystallogr       Date:  2021-02-19       Impact factor: 4.868

6.  Using a modified double deep image prior for crosstalk mitigation in multislice ptychography.

Authors:  Ming Du; Xiaojing Huang; Chris Jacobsen
Journal:  J Synchrotron Radiat       Date:  2021-05-19       Impact factor: 2.616

  6 in total

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