Literature DB >> 25675478

Simultaneous cryo X-ray ptychographic and fluorescence microscopy of green algae.

Junjing Deng1, David J Vine2, Si Chen2, Youssef S G Nashed3, Qiaoling Jin4, Nicholas W Phillips5, Tom Peterka3, Rob Ross3, Stefan Vogt2, Chris J Jacobsen6.   

Abstract

Trace metals play important roles in normal and in disease-causing biological functions. X-ray fluorescence microscopy reveals trace elements with no dependence on binding affinities (unlike with visible light fluorophores) and with improved sensitivity relative to electron probes. However, X-ray fluorescence is not very sensitive for showing the light elements that comprise the majority of cellular material. Here we show that X-ray ptychography can be combined with fluorescence to image both cellular structure and trace element distribution in frozen-hydrated cells at cryogenic temperatures, with high structural and chemical fidelity. Ptychographic reconstruction algorithms deliver phase and absorption contrast images at a resolution beyond that of the illuminating lens or beam size. Using 5.2-keV X-rays, we have obtained sub-30-nm resolution structural images and ∼90-nm-resolution fluorescence images of several elements in frozen-hydrated green algae. This combined approach offers a way to study the role of trace elements in their structural context.

Entities:  

Keywords:  X-ray fluorescence microscopy; cryogenic biological samples; ptychography

Mesh:

Year:  2015        PMID: 25675478      PMCID: PMC4345580          DOI: 10.1073/pnas.1413003112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  52 in total

1.  Imaging whole Escherichia coli bacteria by using single-particle x-ray diffraction.

Authors:  Jianwei Miao; Keith O Hodgson; Tetsuya Ishikawa; Carolyn A Larabell; Mark A LeGros; Yoshinori Nishino
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-23       Impact factor: 11.205

2.  Wilson disease at a single cell level: intracellular copper trafficking activates compartment-specific responses in hepatocytes.

Authors:  Martina Ralle; Dominik Huster; Stefan Vogt; Wiebke Schirrmeister; Jason L Burkhead; Tony R Capps; Lawrence Gray; Barry Lai; Edward Maryon; Svetlana Lutsenko
Journal:  J Biol Chem       Date:  2010-07-20       Impact factor: 5.157

Review 3.  X-ray fluorescence microprobe imaging in biology and medicine.

Authors:  Tatjana Paunesku; Stefan Vogt; Jörg Maser; Barry Lai; Gayle Woloschak
Journal:  J Cell Biochem       Date:  2006-12-15       Impact factor: 4.429

Review 4.  Biological applications of X-ray fluorescence microscopy: exploring the subcellular topography and speciation of transition metals.

Authors:  Christoph J Fahrni
Journal:  Curr Opin Chem Biol       Date:  2007-03-13       Impact factor: 8.822

5.  Diffracting aperture based differential phase contrast for scanning X-ray microscopy.

Authors:  Burkhard Kaulich; Francois Polack; Ulrich Neuhaeusler; Jean Susini; Enzo di Fabrizio; Thomas Wilhein
Journal:  Opt Express       Date:  2002-10-07       Impact factor: 3.894

Review 6.  Soft X-ray microscopes and their biological applications.

Authors:  J Kirz; C Jacobsen; M Howells
Journal:  Q Rev Biophys       Date:  1995-02       Impact factor: 5.318

7.  High-resolution x-ray diffraction microscopy of specifically labeled yeast cells.

Authors:  Johanna Nelson; Xiaojing Huang; Jan Steinbrener; David Shapiro; Janos Kirz; Stefano Marchesini; Aaron M Neiman; Joshua J Turner; Chris Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

8.  The correlation averaging of a regularly arranged bacterial cell envelope protein.

Authors:  W O Saxton; W Baumeister
Journal:  J Microsc       Date:  1982-08       Impact factor: 1.758

9.  Zernike phase contrast in scanning microscopy with X-rays.

Authors:  Christian Holzner; Michael Feser; Stefan Vogt; Benjamin Hornberger; Stephen B Baines; Chris Jacobsen
Journal:  Nat Phys       Date:  2010-11-01       Impact factor: 20.034

10.  X-ray tomography generates 3-D reconstructions of the yeast, saccharomyces cerevisiae, at 60-nm resolution.

Authors:  Carolyn A Larabell; Mark A Le Gros
Journal:  Mol Biol Cell       Date:  2003-12-29       Impact factor: 4.138

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  37 in total

1.  A New Workflow for x-ray fluorescence tomography: MAPSToTomoPy.

Authors:  Young Pyo Hong; Si Chen; Chris Jacobsen
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-09-18

2.  X-ray-Based Techniques to Study the Nano-Bio Interface.

Authors:  Carlos Sanchez-Cano; Ramon A Alvarez-Puebla; John M Abendroth; Tobias Beck; Robert Blick; Yuan Cao; Frank Caruso; Indranath Chakraborty; Henry N Chapman; Chunying Chen; Bruce E Cohen; Andre L C Conceição; David P Cormode; Daxiang Cui; Kenneth A Dawson; Gerald Falkenberg; Chunhai Fan; Neus Feliu; Mingyuan Gao; Elisabetta Gargioni; Claus-C Glüer; Florian Grüner; Moustapha Hassan; Yong Hu; Yalan Huang; Samuel Huber; Nils Huse; Yanan Kang; Ali Khademhosseini; Thomas F Keller; Christian Körnig; Nicholas A Kotov; Dorota Koziej; Xing-Jie Liang; Beibei Liu; Sijin Liu; Yang Liu; Ziyao Liu; Luis M Liz-Marzán; Xiaowei Ma; Andres Machicote; Wolfgang Maison; Adrian P Mancuso; Saad Megahed; Bert Nickel; Ferdinand Otto; Cristina Palencia; Sakura Pascarelli; Arwen Pearson; Oula Peñate-Medina; Bing Qi; Joachim Rädler; Joseph J Richardson; Axel Rosenhahn; Kai Rothkamm; Michael Rübhausen; Milan K Sanyal; Raymond E Schaak; Heinz-Peter Schlemmer; Marius Schmidt; Oliver Schmutzler; Theo Schotten; Florian Schulz; A K Sood; Kathryn M Spiers; Theresa Staufer; Dominik M Stemer; Andreas Stierle; Xing Sun; Gohar Tsakanova; Paul S Weiss; Horst Weller; Fabian Westermeier; Ming Xu; Huijie Yan; Yuan Zeng; Ying Zhao; Yuliang Zhao; Dingcheng Zhu; Ying Zhu; Wolfgang J Parak
Journal:  ACS Nano       Date:  2021-03-02       Impact factor: 15.881

Review 3.  Analytical Methods for Imaging Metals in Biology: From Transition Metal Metabolism to Transition Metal Signaling.

Authors:  Cheri M Ackerman; Sumin Lee; Christopher J Chang
Journal:  Anal Chem       Date:  2016-12-15       Impact factor: 6.986

4.  Opportunities and limitations for combined fly-scan ptychography and fluorescence microscopy.

Authors:  Junjing Deng; David J Vine; Si Chen; Youssef S G Nashed; Tom Peterka; Rob Ross; Stefan Vogt; Chris Jacobsen
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2015-09-18

Review 5.  X-ray fluorescence microscopy methods for biological tissues.

Authors:  M Jake Pushie; Nicole J Sylvain; Huishu Hou; Mark J Hackett; Michael E Kelly; Samuel M Webb
Journal:  Metallomics       Date:  2022-06-23       Impact factor: 4.636

6.  Advances and challenges in cryo ptychography at the Advanced Photon Source.

Authors:  J Deng; D J Vine; S Chen; Y S G Nashed; Q Jin; T Peterka; S Vogt; C Jacobsen
Journal:  AIP Conf Proc       Date:  2016

7.  Single-cell visualization and quantification of trace metals in Chlamydomonas lysosome-related organelles.

Authors:  Stefan Schmollinger; Si Chen; Daniela Strenkert; Colleen Hui; Martina Ralle; Sabeeha S Merchant
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

8.  Intracellular nanoparticles mass quantification by near-edge absorption soft X-ray nanotomography.

Authors:  Jose Javier Conesa; Joaquín Otón; Michele Chiappi; Jose María Carazo; Eva Pereiro; Francisco Javier Chichón; José L Carrascosa
Journal:  Sci Rep       Date:  2016-03-10       Impact factor: 4.379

9.  φXANES: In vivo imaging of metal-protein coordination environments.

Authors:  Simon A James; Dominic J Hare; Nicole L Jenkins; Martin D de Jonge; Ashley I Bush; Gawain McColl
Journal:  Sci Rep       Date:  2016-02-10       Impact factor: 4.379

10.  Molar concentration from sequential 2-D water-window X-ray ptychography and X-ray fluorescence in hydrated cells.

Authors:  M W M Jones; K D Elgass; M D Junker; M D de Jonge; G A van Riessen
Journal:  Sci Rep       Date:  2016-04-12       Impact factor: 4.379

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