Literature DB >> 19629713

Quantitative analysis of backbone motion in proteins using MAS solid-state NMR spectroscopy.

Veniamin Chevelkov1, Uwe Fink, Bernd Reif.   

Abstract

We present a comprehensive analysis of protein dynamics for a micro-crystallin protein in the solid-state. Experimental data include (15)N T (1) relaxation times measured at two different magnetic fields as well as (1)H-(15)N dipole, (15)N CSA cross correlated relaxation rates which are sensitive to the spectral density function J(0) and are thus a measure of T (2) in the solid-state. In addition, global order parameters are included from a (1)H,(15)N dipolar recoupling experiment. The data are analyzed within the framework of the extended model-free Clore-Lipari-Szabo theory. We find slow motional correlation times in the range of 5 and 150 ns. Assuming a wobbling in a cone motion, the amplitude of motion of the respective amide moiety is on the order of 10 degrees for the half-opening angle of the cone in most of the cases. The experiments are demonstrated using a perdeuterated sample of the chicken alpha-spectrin SH3 domain.

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Year:  2009        PMID: 19629713     DOI: 10.1007/s10858-009-9348-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  55 in total

1.  Quantitative analysis of backbone dynamics in a crystalline protein from nitrogen-15 spin-lattice relaxation.

Authors:  Nicolas Giraud; Martin Blackledge; Maurice Goldman; Anja Böckmann; Anne Lesage; François Penin; Lyndon Emsley
Journal:  J Am Chem Soc       Date:  2005-12-28       Impact factor: 15.419

2.  Chemical-shift anisotropy measurements of amide and carbonyl resonances in a microcrystalline protein with slow magic-angle spinning NMR spectroscopy.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Heather L Frericks; Gautam J Shah; W Trent Franks; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2007-04-11       Impact factor: 15.419

3.  Asymmetric doublets in MAS NMR: coherent and incoherent mechanisms.

Authors:  N R Skrynnikov
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

4.  Quantitative measurement of differential 15N-H(alpha/beta)T2 relaxation rates in a perdeuterated protein by MAS solid-state NMR spectroscopy.

Authors:  Veniamin Chevelkov; Anne Diehl; Bernd Reif
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

5.  Molecular conformation and dynamics of the Y145Stop variant of human prion protein in amyloid fibrils.

Authors:  Jonathan J Helmus; Krystyna Surewicz; Philippe S Nadaud; Witold K Surewicz; Christopher P Jaroniec
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-24       Impact factor: 11.205

6.  Residual methyl protonation in perdeuterated proteins for multi-dimensional correlation experiments in MAS solid-state NMR spectroscopy.

Authors:  Vipin Agarwal; Bernd Reif
Journal:  J Magn Reson       Date:  2008-06-20       Impact factor: 2.229

7.  Obligatory steps in protein folding and the conformational diversity of the transition state.

Authors:  J C Martinez; M T Pisabarro; L Serrano
Journal:  Nat Struct Biol       Date:  1998-08

8.  Solid-state NMR investigation of the dynamics of the soluble and membrane-bound colicin Ia channel-forming domain.

Authors:  D Huster; L Xiao; M Hong
Journal:  Biochemistry       Date:  2001-06-26       Impact factor: 3.162

9.  15N relaxation study of the cold shock protein CspB at various solvent viscosities.

Authors:  Markus Zeeb; Maik H Jacob; Thomas Schindler; Jochen Balbach
Journal:  J Biomol NMR       Date:  2003-11       Impact factor: 2.835

10.  Detection of nanosecond time scale side-chain jumps in a protein dissolved in water/glycerol solvent.

Authors:  Jun Xu; Yi Xue; Nikolai R Skrynnikov
Journal:  J Biomol NMR       Date:  2009-07-07       Impact factor: 2.835

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  21 in total

1.  Efficient band-selective homonuclear CO-CA cross-polarization in protonated proteins.

Authors:  Veniamin Chevelkov; Chaowei Shi; Hannes Klaus Fasshuber; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2013-08-08       Impact factor: 2.835

2.  Internal protein dynamics on ps to μs timescales as studied by multi-frequency (15)N solid-state NMR relaxation.

Authors:  Tatiana Zinkevich; Veniamin Chevelkov; Bernd Reif; Kay Saalwächter; Alexey Krushelnitsky
Journal:  J Biomol NMR       Date:  2013-09-19       Impact factor: 2.835

3.  Mechanistic Insights into Microsecond Time-Scale Motion of Solid Proteins Using Complementary 15N and 1H Relaxation Dispersion Techniques.

Authors:  Petra Rovó; Colin A Smith; Diego Gauto; Bert L de Groot; Paul Schanda; Rasmus Linser
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

4.  Perspectives for sensitivity enhancement in proton-detected solid-state NMR of highly deuterated proteins by preserving water magnetization.

Authors:  Veniamin Chevelkov; ShengQi Xiang; Karin Giller; Stefan Becker; Adam Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2015-01-30       Impact factor: 2.835

5.  Determination of methyl order parameters using solid state NMR under off magic angle spinning.

Authors:  Kai Xue; Salvatore Mamone; Benita Koch; Riddhiman Sarkar; Bernd Reif
Journal:  J Biomol NMR       Date:  2019-08-12       Impact factor: 2.835

6.  Motions on the millisecond time scale and multiple conformations of HIV-1 capsid protein: implications for structural polymorphism of CA assemblies.

Authors:  In-Ja L Byeon; Guangjin Hou; Yun Han; Christopher L Suiter; Jinwoo Ahn; Jinwon Jung; Chang-Hyeock Byeon; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2012-04-02       Impact factor: 15.419

7.  Site-specific analysis of heteronuclear Overhauser effects in microcrystalline proteins.

Authors:  Juan Miguel Lopez del Amo; Vipin Agarwal; Riddhiman Sarkar; Justin Porter; Sam Asami; Martin Rübbelke; Uwe Fink; Yi Xue; Oliver F Lange; Bernd Reif
Journal:  J Biomol NMR       Date:  2014-07-03       Impact factor: 2.835

8.  Dynamics in the solid-state: perspectives for the investigation of amyloid aggregates, membrane proteins and soluble protein complexes.

Authors:  Rasmus Linser; Riddhiman Sarkar; Alexey Krushelnitzky; Andi Mainz; Bernd Reif
Journal:  J Biomol NMR       Date:  2014-03-05       Impact factor: 2.835

9.  Characterization of fibril dynamics on three timescales by solid-state NMR.

Authors:  Albert A Smith; Emilie Testori; Riccardo Cadalbert; Beat H Meier; Matthias Ernst
Journal:  J Biomol NMR       Date:  2016-07-16       Impact factor: 2.835

Review 10.  Magic angle spinning NMR of viruses.

Authors:  Caitlin M Quinn; Manman Lu; Christopher L Suiter; Guangjin Hou; Huilan Zhang; Tatyana Polenova
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2015-02-16       Impact factor: 9.795

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