Literature DB >> 18555680

Structural specificity in coiled-coil interactions.

Gevorg Grigoryan1, Amy E Keating.   

Abstract

Coiled coils have a rich history in the field of protein design and engineering. Novel structures, such as the first seven-helix coiled coil, continue to provide surprises and insights. Large-scale datasets quantifying the influence of systematic mutations on coiled-coil stability are a valuable new asset to the area. Scoring methods based on sequence and/or structure can predict interaction preferences in coiled-coil-mediated bZIP transcription factor dimerization. Experimental and computational methods for dealing with the near-degeneracy of many coiled-coil structures appear promising for future design applications.

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Year:  2008        PMID： 18555680      PMCID： PMC2567808          DOI： 10.1016/j.sbi.2008.04.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN： 0959-440X            Impact factor:   6.809


  55 in total

1.  Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

Authors:  J Walshaw; D N Woolfson
Journal:  J Mol Biol       Date:  2001-04-13       Impact factor: 5.469

Review 2.  The structure of alpha-helical coiled coils.

Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

3.  Structure-based prediction of bZIP partnering specificity.

Authors:  Gevorg Grigoryan; Amy E Keating
Journal:  J Mol Biol       Date:  2005-12-01       Impact factor: 5.469

4.  Statistical analysis of intrahelical ionic interactions in alpha-helices and coiled coils.

Authors:  Markus Meier; Peter Burkhard
Journal:  J Struct Biol       Date:  2006-05-16       Impact factor: 2.867

5.  Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution.

Authors:  Maneesh K Yadav; Luke J Leman; Daniel J Price; Charles L Brooks; C David Stout; M Reza Ghadiri
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

Review 6.  Peptide-based fibrous biomaterials: Some things old, new and borrowed.

Authors:  Derek N Woolfson; Maxim G Ryadnov
Journal:  Curr Opin Chem Biol       Date:  2006-10-09       Impact factor: 8.822

7.  Modular enzyme design: regulation by mutually exclusive protein folding.

Authors:  Jeung-Hoi Ha; James S Butler; Diana M Mitrea; Stewart N Loh
Journal:  J Mol Biol       Date:  2006-02-06       Impact factor: 5.469

Review 8.  Coiled coils: new structures and new functions.

Authors:  A Lupas
Journal:  Trends Biochem Sci       Date:  1996-10       Impact factor: 13.807

Review 9.  Native-like and structurally characterized designed alpha-helical bundles.

Authors:  S F Betz; J W Bryson; W F DeGrado
Journal:  Curr Opin Struct Biol       Date:  1995-08       Impact factor: 6.809

10.  Engineering nanoscale order into a designed protein fiber.

Authors:  David Papapostolou; Andrew M Smith; Edward D T Atkins; Seb J Oliver; Maxim G Ryadnov; Louise C Serpell; Derek N Woolfson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-13       Impact factor: 11.205
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  113 in total

1.  The Aspergillus nidulans metZ gene encodes a transcription factor involved in regulation of sulfur metabolism in this fungus and other Eurotiales.

Authors:  Sebastian Piłsyk; Renata Natorff; Marzena Sieńko; Marek Skoneczny; Andrzej Paszewski; Jerzy Brzywczy
Journal:  Curr Genet       Date:  2014-11-13       Impact factor: 3.886

2.  Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction.

Authors:  Andriy Kryshtafovych; John Moult; Sergio G Bartual; J Fernando Bazan; Helen Berman; Darren E Casteel; Evangelos Christodoulou; John K Everett; Jens Hausmann; Tatjana Heidebrecht; Tanya Hills; Raymond Hui; John F Hunt; Jayaraman Seetharaman; Andrzej Joachimiak; Michael A Kennedy; Choel Kim; Andreas Lingel; Karolina Michalska; Gaetano T Montelione; José M Otero; Anastassis Perrakis; Juan C Pizarro; Mark J van Raaij; Theresa A Ramelot; Francois Rousseau; Liang Tong; Amy K Wernimont; Jasmine Young; Torsten Schwede
Journal:  Proteins       Date:  2011-10-21

3.  Computational design of a protein crystal.

Authors:  Christopher J Lanci; Christopher M MacDermaid; Seung-gu Kang; Rudresh Acharya; Benjamin North; Xi Yang; X Jade Qiu; William F DeGrado; Jeffery G Saven
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-25       Impact factor: 11.205

4.  Induced heterodimerization and purification of two target proteins by a synthetic coiled-coil tag.

Authors:  Jesus Fernandez-Rodriguez; Thomas C Marlovits
Journal:  Protein Sci       Date:  2012-02-23       Impact factor: 6.725

5.  Coiled coils ensure the physiological ectodomain shedding of collagen XVII.

Authors:  Wataru Nishie; Joanna Jackow; Silke C Hofmann; Claus-Werner Franzke; Leena Bruckner-Tuderman
Journal:  J Biol Chem       Date:  2012-07-03       Impact factor: 5.157

6.  Structural basis for cAMP-mediated allosteric control of the catabolite activator protein.

Authors:  Nataliya Popovych; Shiou-Ru Tzeng; Marco Tonelli; Richard H Ebright; Charalampos G Kalodimos
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-09       Impact factor: 11.205

7.  Structure and stability of the C-terminal helical bundle of the E. coli mechanosensitive channel of large conductance.

Authors:  Troy A Walton; Douglas C Rees
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

8.  Design of fast proteolysis-based signaling and logic circuits in mammalian cells.

Authors:  Tina Fink; Jan Lonzarić; Arne Praznik; Tjaša Plaper; Estera Merljak; Katja Leben; Nina Jerala; Tina Lebar; Žiga Strmšek; Fabio Lapenta; Mojca Benčina; Roman Jerala
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 15.040

9.  A Barcoding Strategy Enabling Higher-Throughput Library Screening by Microscopy.

Authors:  Robert Chen; Harneet S Rishi; Vladimir Potapov; Masaki R Yamada; Vincent J Yeh; Thomas Chow; Celia L Cheung; Austin T Jones; Terry D Johnson; Amy E Keating; William C DeLoache; John E Dueber
Journal:  ACS Synth Biol       Date:  2015-07-15       Impact factor: 5.110

10.  Expression, purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal NHL domain of human TRIM2.

Authors:  Xiaotao Guan; Jun Li; Xingru Lü; Yu Dong; Weimin Chen; Xuemei Li
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-04-25       Impact factor: 1.056
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