Literature DB >> 19568981

Estimating linear-nonlinear models using Renyi divergences.

Minjoon Kouh1, Tatyana O Sharpee.   

Abstract

This article compares a family of methods for characterizing neural feature selectivity using natural stimuli in the framework of the linear-nonlinear model. In this model, the spike probability depends in a nonlinear way on a small number of stimulus dimensions. The relevant stimulus dimensions can be found by optimizing a Rényi divergence that quantifies a change in the stimulus distribution associated with the arrival of single spikes. Generally, good reconstructions can be obtained based on optimization of Rényi divergence of any order, even in the limit of small numbers of spikes. However, the smallest error is obtained when the Rényi divergence of order 1 is optimized. This type of optimization is equivalent to information maximization, and is shown to saturate the Cramer-Rao bound describing the smallest error allowed for any unbiased method. We also discuss conditions under which information maximization provides a convenient way to perform maximum likelihood estimation of linear-nonlinear models from neural data.

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Year:  2009        PMID: 19568981      PMCID: PMC2782376          DOI: 10.1080/09548980902950891

Source DB:  PubMed          Journal:  Network        ISSN: 0954-898X            Impact factor:   1.273


  29 in total

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4.  Analyzing neural responses to natural signals: maximally informative dimensions.

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5.  Prediction and decoding of retinal ganglion cell responses with a probabilistic spiking model.

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8.  Predicting neuronal responses during natural vision.

Authors:  Stephen V David; Jack L Gallant
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  18 in total

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2.  Characterizing responses of translation-invariant neurons to natural stimuli: maximally informative invariant dimensions.

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5.  Temporal precision in the visual pathway through the interplay of excitation and stimulus-driven suppression.

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6.  Two-dimensional adaptation in the auditory forebrain.

Authors:  Tatyana O Sharpee; Katherine I Nagel; Allison J Doupe
Journal:  J Neurophysiol       Date:  2011-07-13       Impact factor: 2.714

7.  Multidimensional receptive field processing by cat primary auditory cortical neurons.

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8.  A generalized linear model for estimating spectrotemporal receptive fields from responses to natural sounds.

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Journal:  PLoS One       Date:  2011-01-11       Impact factor: 3.240

9.  Inferring nonlinear neuronal computation based on physiologically plausible inputs.

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Journal:  PLoS Comput Biol       Date:  2013-07-18       Impact factor: 4.475

10.  Spike triggered covariance in strongly correlated gaussian stimuli.

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Journal:  PLoS Comput Biol       Date:  2013-09-05       Impact factor: 4.475

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