Literature DB >> 15006095

Analyzing neural responses to natural signals: maximally informative dimensions.

Tatyana Sharpee1, Nicole C Rust, William Bialek.   

Abstract

We propose a method that allows for a rigorous statistical analysis of neural responses to natural stimuli that are nongaussian and exhibit strong correlations. We have in mind a model in which neurons are selective for a small number of stimulus dimensions out of a high-dimensional stimulus space, but within this subspace the responses can be arbitrarily nonlinear. Existing analysis methods are based on correlation functions between stimuli and responses, but these methods are guaranteed to work only in the case of gaussian stimulus ensembles. As an alternative to correlation functions, we maximize the mutual information between the neural responses and projections of the stimulus onto low-dimensional subspaces. The procedure can be done iteratively by increasing the dimensionality of this subspace. Those dimensions that allow the recovery of all of the information between spikes and the full unprojected stimuli describe the relevant subspace. If the dimensionality of the relevant subspace indeed is small, it becomes feasible to map the neuron's input-output function even under fully natural stimulus conditions. These ideas are illustrated in simulations on model visual and auditory neurons responding to natural scenes and sounds, respectively.

Mesh:

Year:  2004        PMID: 15006095     DOI: 10.1162/089976604322742010

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  125 in total

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Authors:  Dario L Ringach
Journal:  J Physiol       Date:  2004-05-21       Impact factor: 5.182

2.  Receptive field dimensionality increases from the auditory midbrain to cortex.

Authors:  Craig A Atencio; Tatyana O Sharpee; Christoph E Schreiner
Journal:  J Neurophysiol       Date:  2012-02-08       Impact factor: 2.714

3.  Inferring the role of inhibition in auditory processing of complex natural stimuli.

Authors:  Nadja Schinkel-Bielefeld; Stephen V David; Shihab A Shamma; Daniel A Butts
Journal:  J Neurophysiol       Date:  2012-03-28       Impact factor: 2.714

4.  Characterizing responses of translation-invariant neurons to natural stimuli: maximally informative invariant dimensions.

Authors:  Michael Eickenberg; Ryan J Rowekamp; Minjoon Kouh; Tatyana O Sharpee
Journal:  Neural Comput       Date:  2012-06-26       Impact factor: 2.026

5.  Recoding of sensory information across the retinothalamic synapse.

Authors:  Xin Wang; Judith A Hirsch; Friedrich T Sommer
Journal:  J Neurosci       Date:  2010-10-13       Impact factor: 6.167

6.  Understanding spike-triggered covariance using Wiener theory for receptive field identification.

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Journal:  J Vis       Date:  2015       Impact factor: 2.240

7.  On-going computation of whisking phase by mechanoreceptors.

Authors:  Avner Wallach; Knarik Bagdasarian; Ehud Ahissar
Journal:  Nat Neurosci       Date:  2016-01-18       Impact factor: 24.884

8.  Central auditory neurons have composite receptive fields.

Authors:  Andrei S Kozlov; Timothy Q Gentner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

9.  Spatial structure of neuronal receptive field in awake monkey secondary visual cortex (V2).

Authors:  Lu Liu; Liang She; Ming Chen; Tianyi Liu; Haidong D Lu; Yang Dan; Mu-ming Poo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-02       Impact factor: 11.205

10.  Maximally informative pairwise interactions in networks.

Authors:  Jeffrey D Fitzgerald; Tatyana O Sharpee
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-09-23
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