Literature DB >> 12613556

Analysis of neural coding through quantization with an information-based distortion measure.

Alexander G Dimitrov1, John P Miller, Tomás Gedeon, Zane Aldworth, Albert E Parker.   

Abstract

We discuss an analytical approach through which the neural symbols and corresponding stimulus space of a neuron or neural ensemble can be discovered simultaneously and quantitatively, making few assumptions about the nature of the code or relevant features. The basis for this approach is to conceptualize a neural coding scheme as a collection of stimulus-response classes akin to a dictionary or 'codebook', with each class corresponding to a spike pattern 'codeword' and its corresponding stimulus feature in the codebook. The neural codebook is derived by quantizing the neural responses into a small reproduction set, and optimizing the quantization to minimize an information-based distortion function. We apply this approach to the analysis of coding in sensory interneurons of a simple invertebrate sensory system. For a simple sensory characteristic (tuning curve), we demonstrate a case for which the classical definition of tuning does not describe adequately the performance of the cell studied. Considering a more involved sensory operation (sensory discrimination), we also show that, for some cells in this system, a significant amount of information is encoded in patterns of spikes that would not be discovered through analyses based on linear stimulus-response measures.

Mesh:

Year:  2003        PMID: 12613556

Source DB:  PubMed          Journal:  Network        ISSN: 0954-898X            Impact factor:   1.273


  7 in total

1.  Characterizing the fine structure of a neural sensory code through information distortion.

Authors:  Alexander G Dimitrov; Graham I Cummins; Aditi Baker; Zane N Aldworth
Journal:  J Comput Neurosci       Date:  2010-08-21       Impact factor: 1.621

2.  Dejittered spike-conditioned stimulus waveforms yield improved estimates of neuronal feature selectivity and spike-timing precision of sensory interneurons.

Authors:  Zane N Aldworth; John P Miller; Tomás Gedeon; Graham I Cummins; Alexander G Dimitrov
Journal:  J Neurosci       Date:  2005-06-01       Impact factor: 6.167

3.  Effects of stimulus transformations on estimates of sensory neuron selectivity.

Authors:  Alexander G Dimitrov; Tomás Gedeon
Journal:  J Comput Neurosci       Date:  2006-04-22       Impact factor: 1.621

4.  Estimating linear-nonlinear models using Renyi divergences.

Authors:  Minjoon Kouh; Tatyana O Sharpee
Journal:  Network       Date:  2009       Impact factor: 1.273

5.  Olfactory Navigation and the Receptor Nonlinearity.

Authors:  Jonathan D Victor; Sebastian D Boie; Erin G Connor; John P Crimaldi; G Bard Ermentrout; Katherine I Nagel
Journal:  J Neurosci       Date:  2019-03-07       Impact factor: 6.167

6.  Temporal encoding in a nervous system.

Authors:  Zane N Aldworth; Alexander G Dimitrov; Graham I Cummins; Tomáš Gedeon; John P Miller
Journal:  PLoS Comput Biol       Date:  2011-05-05       Impact factor: 4.475

7.  Information transmission in cercal giant interneurons is unaffected by axonal conduction noise.

Authors:  Zane N Aldworth; John A Bender; John P Miller
Journal:  PLoS One       Date:  2012-01-12       Impact factor: 3.240

  7 in total

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