Literature DB >> 19566089

Folding DNA origami from a double-stranded source of scaffold.

Björn Högberg1, Tim Liedl, William M Shih.   

Abstract

Combined heat and chemical denaturation of double-stranded DNA scaffold strands in the presence of staple strands, followed by a sudden temperature drop and then stepwise dialysis to remove the chemical denaturant, leads to self-assembly of two distinct DNA-origami structures.

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Year:  2009        PMID： 19566089      PMCID： PMC2724999          DOI： 10.1021/ja902569x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN： 0002-7863            Impact factor:   15.419


  10 in total

Review 1.  The thermodynamics of DNA structural motifs.

Authors:  John SantaLucia; Donald Hicks
Journal:  Annu Rev Biophys Biomol Struct       Date:  2004

2.  Thermodynamics of DNA branching.

Authors:  M Lu; Q Guo; L A Marky; N C Seeman; N R Kallenbach
Journal:  J Mol Biol       Date:  1992-02-05       Impact factor: 5.469

3.  DNA-nanotube-induced alignment of membrane proteins for NMR structure determination.

Authors:  Shawn M Douglas; James J Chou; William M Shih
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-02       Impact factor: 11.205

Review 4.  An overview of structural DNA nanotechnology.

Authors:  Nadrian C Seeman
Journal:  Mol Biotechnol       Date:  2007-07-12       Impact factor: 2.695

5.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

6.  Isothermal assembly of DNA origami structures using denaturing agents.

Authors:  Ralf Jungmann; Tim Liedl; Thomas L Sobey; William Shih; Friedrich C Simmel
Journal:  J Am Chem Soc       Date:  2008-07-10       Impact factor: 15.419

7.  Nucleic acid reassociation in formamide.

Authors:  B L McConaughy; C D Laird; B J McCarthy
Journal:  Biochemistry       Date:  1969-08       Impact factor: 3.162

8.  Thermodynamic effects of formamide on DNA stability.

Authors:  R D Blake; S G Delcourt
Journal:  Nucleic Acids Res       Date:  1996-06-01       Impact factor: 16.971

9.  Determination of DNA melting temperatures in diffusion-generated chemical gradients.

Authors:  Tim Liedl; Friedrich C Simmel
Journal:  Anal Chem       Date:  2007-06-12       Impact factor: 6.986

10.  Self-assembly of DNA into nanoscale three-dimensional shapes.

Authors:  Shawn M Douglas; Hendrik Dietz; Tim Liedl; Björn Högberg; Franziska Graf; William M Shih
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962
  10 in total
  19 in total

Review 1.  Knitting complex weaves with DNA origami.

Authors:  William M Shih; Chenxiang Lin
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  A primer to scaffolded DNA origami.

Authors:  Carlos Ernesto Castro; Fabian Kilchherr; Do-Nyun Kim; Enrique Lin Shiao; Tobias Wauer; Philipp Wortmann; Mark Bathe; Hendrik Dietz
Journal:  Nat Methods       Date:  2011-03       Impact factor: 28.547

3.  DNA origami-based standards for quantitative fluorescence microscopy.

Authors:  Jürgen J Schmied; Mario Raab; Carsten Forthmann; Enrico Pibiri; Bettina Wünsch; Thorben Dammeyer; Philip Tinnefeld
Journal:  Nat Protoc       Date:  2014-05-15       Impact factor: 13.491

4.  Organizing DNA origami tiles into larger structures using preformed scaffold frames.

Authors:  Zhao Zhao; Yan Liu; Hao Yan
Journal:  Nano Lett       Date:  2011-06-23       Impact factor: 11.189

Review 5.  Nanomaterials based on DNA.

Authors:  Nadrian C Seeman
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

Review 6.  DNA origami: a quantum leap for self-assembly of complex structures.

Authors:  Thomas Tørring; Niels V Voigt; Jeanette Nangreave; Hao Yan; Kurt V Gothelf
Journal:  Chem Soc Rev       Date:  2011-05-19       Impact factor: 54.564

7.  Self-assembly of three-dimensional prestressed tensegrity structures from DNA.

Authors:  Tim Liedl; Björn Högberg; Jessica Tytell; Donald E Ingber; William M Shih
Journal:  Nat Nanotechnol       Date:  2010-06-20       Impact factor: 39.213

8.  DNA origami with double-stranded DNA as a unified scaffold.

Authors:  Yang Yang; Dongran Han; Jeanette Nangreave; Yan Liu; Hao Yan
Journal:  ACS Nano       Date:  2012-07-27       Impact factor: 15.881

Review 9.  Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials.

Authors:  Peiwen Wu; Yang Yu; Claire E McGhee; Li Huey Tan; Yi Lu
Journal:  Adv Mater       Date:  2014-09-10       Impact factor: 30.849

10.  Enzymatic production of 'monoclonal stoichiometric' single-stranded DNA oligonucleotides.

Authors:  Cosimo Ducani; Corinna Kaul; Martin Moche; William M Shih; Björn Högberg
Journal:  Nat Methods       Date:  2013-06-02       Impact factor: 28.547
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