Literature DB >> 18613687

Isothermal assembly of DNA origami structures using denaturing agents.

Ralf Jungmann1, Tim Liedl, Thomas L Sobey, William Shih, Friedrich C Simmel.   

Abstract

DNA origami is one of the most promising recent developments in DNA self-assembly. It allows for the construction of arbitrary nanoscale patterns and objects by folding a long viral scaffold strand using a large number of short "staple" strands. Assembly is usually accomplished by thermal annealing of the DNA molecules in buffer solution. We here demonstrate that both 2D and 3D origami structures can be assembled isothermally by annealing the DNA strands in denaturing buffer, followed by a controlled reduction of denaturant concentration. This opens up origami assembly for the integration of temperature-sensitive components.

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Year:  2008        PMID: 18613687     DOI: 10.1021/ja8030196

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

Review 1.  Knitting complex weaves with DNA origami.

Authors:  William M Shih; Chenxiang Lin
Journal:  Curr Opin Struct Biol       Date:  2010-04-22       Impact factor: 6.809

2.  Model-driven optimization of multicomponent self-assembly processes.

Authors:  Peter A Korevaar; Christophe Grenier; Albert J Markvoort; Albertus P H J Schenning; Tom F A de Greef; E W Meijer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

3.  Folding DNA origami from a double-stranded source of scaffold.

Authors:  Björn Högberg; Tim Liedl; William M Shih
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

4.  A primer to scaffolded DNA origami.

Authors:  Carlos Ernesto Castro; Fabian Kilchherr; Do-Nyun Kim; Enrique Lin Shiao; Tobias Wauer; Philipp Wortmann; Mark Bathe; Hendrik Dietz
Journal:  Nat Methods       Date:  2011-03       Impact factor: 28.547

5.  Electrically controlled DNA adhesion.

Authors:  Matthias Erdmann; Ralf David; Ann Fornof; Hermann E Gaub
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

6.  Universal Super-Resolution Multiplexing by DNA Exchange.

Authors:  Florian Schueder; Maximilian T Strauss; David Hoerl; Joerg Schnitzbauer; Thomas Schlichthaerle; Sebastian Strauss; Peng Yin; Hartmann Harz; Heinrich Leonhardt; Ralf Jungmann
Journal:  Angew Chem Int Ed Engl       Date:  2017-03-03       Impact factor: 15.336

7.  DNA origami-based standards for quantitative fluorescence microscopy.

Authors:  Jürgen J Schmied; Mario Raab; Carsten Forthmann; Enrico Pibiri; Bettina Wünsch; Thorben Dammeyer; Philip Tinnefeld
Journal:  Nat Protoc       Date:  2014-05-15       Impact factor: 13.491

8.  Determining the folding and binding free energy of DNA-based nanodevices and nanoswitches using urea titration curves.

Authors:  Andrea Idili; Francesco Ricci; Alexis Vallée-Bélisle
Journal:  Nucleic Acids Res       Date:  2017-07-27       Impact factor: 16.971

9.  Self-assembly of DNA into nanoscale three-dimensional shapes.

Authors:  Shawn M Douglas; Hendrik Dietz; Tim Liedl; Björn Högberg; Franziska Graf; William M Shih
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

10.  Rapid prototyping of 3D DNA-origami shapes with caDNAno.

Authors:  Shawn M Douglas; Adam H Marblestone; Surat Teerapittayanon; Alejandro Vazquez; George M Church; William M Shih
Journal:  Nucleic Acids Res       Date:  2009-06-16       Impact factor: 16.971

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