Literature DB >> 25205057

Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterials.

Peiwen Wu1, Yang Yu, Claire E McGhee, Li Huey Tan, Yi Lu.   

Abstract

In this review, we summarize recent progress in the application of synchrotron-based spectroscopic techniques for nucleic acid research that takes advantage of high-flux and high-brilliance electromagnetic radiation from synchrotron sources. The first section of the review focuses on the characterization of the structure and folding processes of nucleic acids using different types of synchrotron-based spectroscopies, such as X-ray absorption spectroscopy, X-ray emission spectroscopy, X-ray photoelectron spectroscopy, synchrotron radiation circular dichroism, X-ray footprinting and small-angle X-ray scattering. In the second section, the characterization of nucleic acid-based nanostructures, nucleic acid-functionalized nanomaterials and nucleic acid-lipid interactions using these spectroscopic techniques is summarized. Insights gained from these studies are described and future directions of this field are also discussed.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  SAXS; nanomaterials; nucleic acids; self-assembly; synchrotron

Mesh:

Substances:

Year:  2014        PMID: 25205057      PMCID: PMC4275547          DOI: 10.1002/adma.201304891

Source DB:  PubMed          Journal:  Adv Mater        ISSN: 0935-9648            Impact factor:   30.849


  253 in total

1.  Absence of dc-conductivity in lambda-DNA.

Authors:  P J de Pablo; F Moreno-Herrero; J Colchero; J Gómez Herrero; P Herrero; A M Baró; P Ordejón; J M Soler; E Artacho
Journal:  Phys Rev Lett       Date:  2000-12-04       Impact factor: 9.161

Review 2.  Gene regulation by riboswitches.

Authors:  Maumita Mandal; Ronald R Breaker
Journal:  Nat Rev Mol Cell Biol       Date:  2004-06       Impact factor: 94.444

3.  Accelerated color change of gold nanoparticles assembled by DNAzymes for simple and fast colorimetric Pb2+ detection.

Authors:  Juewen Liu; Yi Lu
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

4.  Polypeptide folding-mediated tuning of the optical and structural properties of gold nanoparticle assemblies.

Authors:  Daniel Aili; Piotr Gryko; Borja Sepulveda; John A G Dick; Nigel Kirby; Richard Heenan; Lars Baltzer; Bo Liedberg; Mary P Ryan; Molly M Stevens
Journal:  Nano Lett       Date:  2011-11-08       Impact factor: 11.189

5.  Nanoparticle superlattice engineering with DNA.

Authors:  Robert J Macfarlane; Byeongdu Lee; Matthew R Jones; Nadine Harris; George C Schatz; Chad A Mirkin
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

6.  DNA-guided crystallization of colloidal nanoparticles.

Authors:  Dmytro Nykypanchuk; Mathew M Maye; Daniel van der Lelie; Oleg Gang
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

7.  DNA origami design of dolphin-shaped structures with flexible tails.

Authors:  Ebbe S Andersen; Mingdong Dong; Morten M Nielsen; Kasper Jahn; Allan Lind-Thomsen; Wael Mamdouh; Kurt V Gothelf; Flemming Besenbacher; Jørgen Kjems
Journal:  ACS Nano       Date:  2008-06       Impact factor: 15.881

8.  Crystal structure of an RNA aptamer bound to thrombin.

Authors:  Stephen B Long; Meredith B Long; Rebekah R White; Bruce A Sullenger
Journal:  RNA       Date:  2008-10-29       Impact factor: 4.942

9.  Crystalline two-dimensional DNA-origami arrays.

Authors:  Wenyan Liu; Hong Zhong; Risheng Wang; Nadrian C Seeman
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-03       Impact factor: 15.336

Review 10.  Iron homeostasis, oxidative stress, and DNA damage.

Authors:  R Meneghini
Journal:  Free Radic Biol Med       Date:  1997       Impact factor: 7.376

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  2 in total

1.  Rational design of guiding elements to control folding topology in i-motifs with multiple quadruplexes.

Authors:  Alexander S Minasyan; Srinivas Chakravarthy; Suchitra Vardelly; Mark Joseph; Evgueni E Nesterov; Irina V Nesterova
Journal:  Nanoscale       Date:  2021-05-20       Impact factor: 7.790

Review 2.  Small-Angle Scattering as a Structural Probe for Nucleic Acid Nanoparticles (NANPs) in a Dynamic Solution Environment.

Authors:  Ryan C Oliver; Lewis A Rolband; Alanna M Hutchinson-Lundy; Kirill A Afonin; Joanna K Krueger
Journal:  Nanomaterials (Basel)       Date:  2019-05-02       Impact factor: 5.076

  2 in total

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