Literature DB >> 21358626

A primer to scaffolded DNA origami.

Carlos Ernesto Castro1, Fabian Kilchherr, Do-Nyun Kim, Enrique Lin Shiao, Tobias Wauer, Philipp Wortmann, Mark Bathe, Hendrik Dietz.   

Abstract

Molecular self-assembly with scaffolded DNA origami enables building custom-shaped nanometer-scale objects with molecular weights in the megadalton regime. Here we provide a practical guide for design and assembly of scaffolded DNA origami objects. We also introduce a computational tool for predicting the structure of DNA origami objects and provide information on the conditions under which DNA origami objects can be expected to maintain their structure.

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Year:  2011        PMID: 21358626     DOI: 10.1038/nmeth.1570

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  48 in total

1.  THE DEOXYRIBONUCLEASES OF ESCHERICHIA COLI. V. ON THE SPECIFICITY OF EXONUCLEASE I (PHOSPHODIESTERASE).

Authors:  I R LEHMAN; A L NUSSBAUM
Journal:  J Biol Chem       Date:  1964-08       Impact factor: 5.157

2.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

3.  DNA origami design of dolphin-shaped structures with flexible tails.

Authors:  Ebbe S Andersen; Mingdong Dong; Morten M Nielsen; Kasper Jahn; Allan Lind-Thomsen; Wael Mamdouh; Kurt V Gothelf; Flemming Besenbacher; Jørgen Kjems
Journal:  ACS Nano       Date:  2008-06       Impact factor: 15.881

4.  DNA prism structures constructed by folding of multiple rectangular arms.

Authors:  Masayuki Endo; Kumi Hidaka; Takayuki Kato; Keiichi Namba; Hiroshi Sugiyama
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

5.  Folding DNA origami from a double-stranded source of scaffold.

Authors:  Björn Högberg; Tim Liedl; William M Shih
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

Review 6.  Recognition and manipulation of branched DNA structure by junction-resolving enzymes.

Authors:  M F White; M J Giraud-Panis; J R Pöhler; D M Lilley
Journal:  J Mol Biol       Date:  1997-06-27       Impact factor: 5.469

7.  Crystalline two-dimensional DNA-origami arrays.

Authors:  Wenyan Liu; Hong Zhong; Risheng Wang; Nadrian C Seeman
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-03       Impact factor: 15.336

8.  Gene 6 exonuclease of bacteriophage T7. II. Mechanism of the reaction.

Authors:  C Kerr; P D Sadowski
Journal:  J Biol Chem       Date:  1972-01-10       Impact factor: 5.157

9.  Structure of a B-DNA dodecamer: conformation and dynamics.

Authors:  H R Drew; R M Wing; T Takano; C Broka; S Tanaka; K Itakura; R E Dickerson
Journal:  Proc Natl Acad Sci U S A       Date:  1981-04       Impact factor: 11.205

10.  Multilayer DNA origami packed on a square lattice.

Authors:  Yonggang Ke; Shawn M Douglas; Minghui Liu; Jaswinder Sharma; Anchi Cheng; Albert Leung; Yan Liu; William M Shih; Hao Yan
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

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  198 in total

Review 1.  Spatially-interactive biomolecular networks organized by nucleic acid nanostructures.

Authors:  Jinglin Fu; Minghui Liu; Yan Liu; Hao Yan
Journal:  Acc Chem Res       Date:  2012-05-29       Impact factor: 22.384

2.  Placing molecules with Bohr radius resolution using DNA origami.

Authors:  Jonas J Funke; Hendrik Dietz
Journal:  Nat Nanotechnol       Date:  2015-10-19       Impact factor: 39.213

3.  Guiding the folding pathway of DNA origami.

Authors:  Katherine E Dunn; Frits Dannenberg; Thomas E Ouldridge; Marta Kwiatkowska; Andrew J Turberfield; Jonathan Bath
Journal:  Nature       Date:  2015-08-19       Impact factor: 49.962

4.  Folding and Characterization of a Bio-responsive Robot from DNA Origami.

Authors:  Yaniv Amir; Almogit Abu-Horowitz; Ido Bachelet
Journal:  J Vis Exp       Date:  2015-12-03       Impact factor: 1.355

Review 5.  DNA nanotechnology from the test tube to the cell.

Authors:  Yuan-Jyue Chen; Benjamin Groves; Richard A Muscat; Georg Seelig
Journal:  Nat Nanotechnol       Date:  2015-09       Impact factor: 39.213

Review 6.  DNA Origami: Folded DNA-Nanodevices That Can Direct and Interpret Cell Behavior.

Authors:  Cathal J Kearney; Christopher R Lucas; Fergal J O'Brien; Carlos E Castro
Journal:  Adv Mater       Date:  2016-02-03       Impact factor: 30.849

7.  Light sensitization of DNA nanostructures via incorporation of photo-cleavable spacers.

Authors:  Richie E Kohman; Xue Han
Journal:  Chem Commun (Camb)       Date:  2015-04-04       Impact factor: 6.222

8.  Designing a bio-responsive robot from DNA origami.

Authors:  Eldad Ben-Ishay; Almogit Abu-Horowitz; Ido Bachelet
Journal:  J Vis Exp       Date:  2013-07-08       Impact factor: 1.355

9.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

10.  Nuclease Degradation Analysis of DNA Nanostructures Using Gel Electrophoresis.

Authors:  Arun Richard Chandrasekaran; Ken Halvorsen
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2020-09
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