Literature DB >> 21682348

Organizing DNA origami tiles into larger structures using preformed scaffold frames.

Zhao Zhao1, Yan Liu, Hao Yan.   

Abstract

Structural DNA nanotechnology utilizes DNA molecules as programmable information-coding polymers to create higher order structures at the nanometer scale. An important milestone in structural DNA nanotechnology was the development of scaffolded DNA origami in which a long single-stranded viral genome (scaffold strand) is folded into arbitrary shapes by hundreds of short synthetic oligonucleotides (staple strands). The achievable dimensions of the DNA origami tile units are currently limited by the length of the scaffold strand. Here we demonstrate a strategy referred to as "superorigami" or "origami of origami" to scale up DNA origami technology. First, this method uses a collection of bridge strands to prefold a single-stranded DNA scaffold into a loose framework. Subsequently, preformed individual DNA origami tiles are directed onto the loose framework so that each origami tile serves as a large staple. Using this strategy, we demonstrate the ability to organize DNA origami nanostructures into larger spatially addressable architectures.

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Year:  2011        PMID: 21682348      PMCID: PMC3319874          DOI: 10.1021/nl201603a

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  18 in total

1.  Programmed two-dimensional self-assembly of multiple DNA origami jigsaw pieces.

Authors:  Arivazhagan Rajendran; Masayuki Endo; Yousuke Katsuda; Kumi Hidaka; Hiroshi Sugiyama
Journal:  ACS Nano       Date:  2010-12-28       Impact factor: 15.881

2.  Folding and cutting DNA into reconfigurable topological nanostructures.

Authors:  Dongran Han; Suchetan Pal; Yan Liu; Hao Yan
Journal:  Nat Nanotechnol       Date:  2010-10-03       Impact factor: 39.213

3.  A route to scale up DNA origami using DNA tiles as folding staples.

Authors:  Zhao Zhao; Hao Yan; Yan Liu
Journal:  Angew Chem Int Ed Engl       Date:  2010-02-15       Impact factor: 15.336

4.  Design and construction of a box-shaped 3D-DNA origami.

Authors:  Akinori Kuzuya; Makoto Komiyama
Journal:  Chem Commun (Camb)       Date:  2009-06-17       Impact factor: 6.222

5.  DNA prism structures constructed by folding of multiple rectangular arms.

Authors:  Masayuki Endo; Kumi Hidaka; Takayuki Kato; Keiichi Namba; Hiroshi Sugiyama
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

6.  Polymerase chain reaction based scaffold preparation for the production of thin, branched DNA origami nanostructures of arbitrary sizes.

Authors:  Elisabeth Pound; Jeffrey R Ashton; Héctor A Becerril; Adam T Woolley
Journal:  Nano Lett       Date:  2009-12       Impact factor: 11.189

7.  Crystalline two-dimensional DNA-origami arrays.

Authors:  Wenyan Liu; Hong Zhong; Risheng Wang; Nadrian C Seeman
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-03       Impact factor: 15.336

8.  Folding DNA into twisted and curved nanoscale shapes.

Authors:  Hendrik Dietz; Shawn M Douglas; William M Shih
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

9.  Self-assembly of three-dimensional prestressed tensegrity structures from DNA.

Authors:  Tim Liedl; Björn Högberg; Jessica Tytell; Donald E Ingber; William M Shih
Journal:  Nat Nanotechnol       Date:  2010-06-20       Impact factor: 39.213

10.  Multilayer DNA origami packed on a square lattice.

Authors:  Yonggang Ke; Shawn M Douglas; Minghui Liu; Jaswinder Sharma; Anchi Cheng; Albert Leung; Yan Liu; William M Shih; Hao Yan
Journal:  J Am Chem Soc       Date:  2009-11-04       Impact factor: 15.419

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  24 in total

1.  Complex shapes self-assembled from single-stranded DNA tiles.

Authors:  Bryan Wei; Mingjie Dai; Peng Yin
Journal:  Nature       Date:  2012-05-30       Impact factor: 49.962

Review 2.  DNA Origami: Folded DNA-Nanodevices That Can Direct and Interpret Cell Behavior.

Authors:  Cathal J Kearney; Christopher R Lucas; Fergal J O'Brien; Carlos E Castro
Journal:  Adv Mater       Date:  2016-02-03       Impact factor: 30.849

3.  Self-assembly of complex two-dimensional shapes from single-stranded DNA tiles.

Authors:  Bryan Wei; Michelle K Vhudzijena; Joanna Robaszewski; Peng Yin
Journal:  J Vis Exp       Date:  2015-05-08       Impact factor: 1.355

4.  DNA origami-based standards for quantitative fluorescence microscopy.

Authors:  Jürgen J Schmied; Mario Raab; Carsten Forthmann; Enrico Pibiri; Bettina Wünsch; Thorben Dammeyer; Philip Tinnefeld
Journal:  Nat Protoc       Date:  2014-05-15       Impact factor: 13.491

Review 5.  Challenges and opportunities for structural DNA nanotechnology.

Authors:  Andre V Pinheiro; Dongran Han; William M Shih; Hao Yan
Journal:  Nat Nanotechnol       Date:  2011-11-06       Impact factor: 39.213

6.  Fractal assembly of micrometre-scale DNA origami arrays with arbitrary patterns.

Authors:  Grigory Tikhomirov; Philip Petersen; Lulu Qian
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

7.  Electron Microscopic Visualization of Protein Assemblies on Flattened DNA Origami.

Authors:  Leena Mallik; Soma Dhakal; Joseph Nichols; Jacob Mahoney; Anne M Dosey; Shuoxing Jiang; Roger K Sunahara; Georgios Skiniotis; Nils G Walter
Journal:  ACS Nano       Date:  2015-07-13       Impact factor: 15.881

8.  Nano-encrypted Morse code: a versatile approach to programmable and reversible nanoscale assembly and disassembly.

Authors:  Ngo Yin Wong; Hang Xing; Li Huey Tan; Yi Lu
Journal:  J Am Chem Soc       Date:  2013-02-19       Impact factor: 15.419

9.  DNA origami with double-stranded DNA as a unified scaffold.

Authors:  Yang Yang; Dongran Han; Jeanette Nangreave; Yan Liu; Hao Yan
Journal:  ACS Nano       Date:  2012-07-27       Impact factor: 15.881

10.  Free energy landscape of salt-actuated reconfigurable DNA nanodevices.

Authors:  Ze Shi; Gaurav Arya
Journal:  Nucleic Acids Res       Date:  2020-01-24       Impact factor: 16.971

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