Literature DB >> 21983922

Surrogate reporters for enrichment of cells with nuclease-induced mutations.

Hyojin Kim1, Eunji Um, Sung-Rae Cho, Chorong Jung, Hyongbum Kim, Jin-Soo Kim.   

Abstract

Zinc-finger nucleases (ZFNs) and TAL-effector nucleases (TALENs) are powerful tools for creating genetic modifications in eukaryotic cells and organisms. But wild-type and mutant cells that contain genetic modifications induced by these programmable nucleases are often phenotypically indistinguishable, hampering isolation of mutant cells. Here we show that transiently transfected episomal reporters encoding fluorescent proteins can be used as surrogate genes for the efficient enrichment of endogenous gene-modified cells by flow cytometry.

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Year:  2011        PMID: 21983922     DOI: 10.1038/nmeth.1733

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  16 in total

1.  Transient cold shock enhances zinc-finger nuclease-mediated gene disruption.

Authors:  Yannick Doyon; Vivian M Choi; Danny F Xia; Thuy D Vo; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-05-02       Impact factor: 28.547

2.  Genome editing with modularly assembled zinc-finger nucleases.

Authors:  Jin-Soo Kim; Hyung Joo Lee; Dana Carroll
Journal:  Nat Methods       Date:  2010-02       Impact factor: 28.547

3.  An improved zinc-finger nuclease architecture for highly specific genome editing.

Authors:  Jeffrey C Miller; Michael C Holmes; Jianbin Wang; Dmitry Y Guschin; Ya-Li Lee; Igor Rupniewski; Christian M Beausejour; Adam J Waite; Nathaniel S Wang; Kenneth A Kim; Philip D Gregory; Carl O Pabo; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2007-07-01       Impact factor: 54.908

4.  Directed evolution of an enhanced and highly efficient FokI cleavage domain for zinc finger nucleases.

Authors:  Jing Guo; Thomas Gaj; Carlos F Barbas
Journal:  J Mol Biol       Date:  2010-05-04       Impact factor: 5.469

5.  Highly efficient endogenous human gene correction using designed zinc-finger nucleases.

Authors:  Fyodor D Urnov; Jeffrey C Miller; Ya-Li Lee; Christian M Beausejour; Jeremy M Rock; Sheldon Augustus; Andrew C Jamieson; Matthew H Porteus; Philip D Gregory; Michael C Holmes
Journal:  Nature       Date:  2005-04-03       Impact factor: 49.962

6.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

Review 7.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

8.  Targeted gene knockout in mammalian cells by using engineered zinc-finger nucleases.

Authors:  Yolanda Santiago; Edmond Chan; Pei-Qi Liu; Salvatore Orlando; Lin Zhang; Fyodor D Urnov; Michael C Holmes; Dmitry Guschin; Adam Waite; Jeffrey C Miller; Edward J Rebar; Philip D Gregory; Aaron Klug; Trevor N Collingwood
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-21       Impact factor: 11.205

9.  Establishment of HIV-1 resistance in CD4+ T cells by genome editing using zinc-finger nucleases.

Authors:  Elena E Perez; Jianbin Wang; Jeffrey C Miller; Yann Jouvenot; Kenneth A Kim; Olga Liu; Nathaniel Wang; Gary Lee; Victor V Bartsevich; Ya-Li Lee; Dmitry Y Guschin; Igor Rupniewski; Adam J Waite; Carmine Carpenito; Richard G Carroll; Jordan S Orange; Fyodor D Urnov; Edward J Rebar; Dale Ando; Philip D Gregory; James L Riley; Michael C Holmes; Carl H June
Journal:  Nat Biotechnol       Date:  2008-06-29       Impact factor: 54.908

10.  Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly.

Authors:  Hye Joo Kim; Hyung Joo Lee; Hyojin Kim; Seung Woo Cho; Jin-Soo Kim
Journal:  Genome Res       Date:  2009-05-21       Impact factor: 9.043

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  110 in total

1.  Zinc-finger nucleases: how to play two good hands.

Authors:  Mark Isalan
Journal:  Nat Methods       Date:  2011-12-28       Impact factor: 28.547

2.  Histone deacetylase inhibition rescues gene knockout levels achieved with integrase-defective lentiviral vectors encoding zinc-finger nucleases.

Authors:  Laetitia P L Pelascini; Ignazio Maggio; Jin Liu; Maarten Holkers; Toni Cathomen; Manuel A F V Gonçalves
Journal:  Hum Gene Ther Methods       Date:  2013-10-29       Impact factor: 2.396

3.  Generation of targeted mouse mutants by embryo microinjection of TALEN mRNA.

Authors:  Benedikt Wefers; Sudeepta K Panda; Oskar Ortiz; Christina Brandl; Svenja Hensler; Jens Hansen; Wolfgang Wurst; Ralf Kühn
Journal:  Nat Protoc       Date:  2013-10-31       Impact factor: 13.491

4.  Photoactivatable CRISPR-Cas9 for optogenetic genome editing.

Authors:  Yuta Nihongaki; Fuun Kawano; Takahiro Nakajima; Moritoshi Sato
Journal:  Nat Biotechnol       Date:  2015-06-15       Impact factor: 54.908

Review 5.  Recent developments and clinical studies utilizing engineered zinc finger nuclease technology.

Authors:  Young-Il Jo; Hyongbum Kim; Suresh Ramakrishna
Journal:  Cell Mol Life Sci       Date:  2015-06-19       Impact factor: 9.261

6.  Digenome-seq: genome-wide profiling of CRISPR-Cas9 off-target effects in human cells.

Authors:  Daesik Kim; Sangsu Bae; Jeongbin Park; Eunji Kim; Seokjoong Kim; Hye Ryeong Yu; Jinha Hwang; Jong-Il Kim; Jin-Soo Kim
Journal:  Nat Methods       Date:  2015-02-09       Impact factor: 28.547

7.  Dual-reporter surrogate systems for efficient enrichment of genetically modified cells.

Authors:  Chonghua Ren; Kun Xu; Zhongtian Liu; Juncen Shen; Furong Han; Zhilong Chen; Zhiying Zhang
Journal:  Cell Mol Life Sci       Date:  2015-03-01       Impact factor: 9.261

8.  A stable but reversible integrated surrogate reporter for assaying CRISPR/Cas9-stimulated homology-directed repair.

Authors:  Yahong Wen; Grace Liao; Thomas Pritchard; Ting-Ting Zhao; Jon P Connelly; Shondra M Pruett-Miller; Valerie Blanc; Nicholas O Davidson; Blair B Madison
Journal:  J Biol Chem       Date:  2017-02-22       Impact factor: 5.157

9.  Disruption of the ZBED6 binding site in intron 3 of IGF2 by CRISPR/Cas9 leads to enhanced muscle development in Liang Guang Small Spotted pigs.

Authors:  Xiaofeng Liu; Hongbo Liu; Min Wang; Ruiqiang Li; Jianhua Zeng; Delin Mo; Peiqing Cong; Xiaohong Liu; Yaosheng Chen; Zuyong He
Journal:  Transgenic Res       Date:  2018-11-28       Impact factor: 2.788

10.  Physiological and pathophysiological characteristics of ataxin-3 isoforms.

Authors:  Daniel Weishäupl; Juliane Schneider; Barbara Peixoto Pinheiro; Corinna Ruess; Sandra Maria Dold; Felix von Zweydorf; Christian Johannes Gloeckner; Jana Schmidt; Olaf Riess; Thorsten Schmidt
Journal:  J Biol Chem       Date:  2018-11-19       Impact factor: 5.157

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