Literature DB >> 18537722

Critical parameters for genome editing using zinc finger nucleases.

Todd D Camenisch1, Murray H Brilliant, David J Segal.   

Abstract

The possibility to make precise modifications to the genome at high frequency holds tremendous potential for biotechnology, conventional drug development and gene therapy. Homologous recombination is a powerful method for introducing such modifications in organisms such as mice. However, in mammals and plants, the frequency of gene modification by homologous recombination is quite low, precluding the therapeutic use of this methodology. In the past few years, tremendous progress has been made in overcoming one of primary barriers to efficient recombination, namely the introduction of a targeted double-strand break near the intended recombination site. This review will discuss the advances in engineering custom zinc-finger nucleases and their application in stimulating homologous recombination in higher eukaryotic cells at efficiencies approaching 1 in 2 cells.

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Year:  2008        PMID: 18537722     DOI: 10.2174/138955708784567458

Source DB:  PubMed          Journal:  Mini Rev Med Chem        ISSN: 1389-5575            Impact factor:   3.862


  19 in total

Review 1.  Insights from genomic profiling of transcription factors.

Authors:  Peggy J Farnham
Journal:  Nat Rev Genet       Date:  2009-08-11       Impact factor: 53.242

2.  The prospects for designer single-stranded RNA-binding proteins.

Authors:  Joel P Mackay; Josep Font; David J Segal
Journal:  Nat Struct Mol Biol       Date:  2011-02-27       Impact factor: 15.369

Review 3.  Exogenous enzymes upgrade transgenesis and genetic engineering of farm animals.

Authors:  Pablo Bosch; Diego O Forcato; Fabrisio E Alustiza; Ana P Alessio; Alejandro E Fili; María F Olmos Nicotra; Ana C Liaudat; Nancy Rodríguez; Thirumala R Talluri; Wilfried A Kues
Journal:  Cell Mol Life Sci       Date:  2015-02-01       Impact factor: 9.261

Review 4.  In vivo locus-specific editing of the neuroepigenome.

Authors:  Yun Young Yim; Collin D Teague; Eric J Nestler
Journal:  Nat Rev Neurosci       Date:  2020-07-23       Impact factor: 34.870

5.  The generation of zinc finger proteins by modular assembly.

Authors:  Mital S Bhakta; David J Segal
Journal:  Methods Mol Biol       Date:  2010

6.  A TALE nuclease architecture for efficient genome editing.

Authors:  Jeffrey C Miller; Siyuan Tan; Guijuan Qiao; Kyle A Barlow; Jianbin Wang; Danny F Xia; Xiangdong Meng; David E Paschon; Elo Leung; Sarah J Hinkley; Gladys P Dulay; Kevin L Hua; Irina Ankoudinova; Gregory J Cost; Fyodor D Urnov; H Steve Zhang; Michael C Holmes; Lei Zhang; Philip D Gregory; Edward J Rebar
Journal:  Nat Biotechnol       Date:  2010-12-22       Impact factor: 54.908

7.  Targeted mutagenesis in zebrafish using customized zinc-finger nucleases.

Authors:  Jonathan E Foley; Morgan L Maeder; Joseph Pearlberg; J Keith Joung; Randall T Peterson; Jing-Ruey J Yeh
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

8.  Restricted spacer tolerance of a zinc finger nuclease with a six amino acid linker.

Authors:  Yuka Shimizu; Mital S Bhakta; David J Segal
Journal:  Bioorg Med Chem Lett       Date:  2009-03-03       Impact factor: 2.823

9.  Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

Authors:  Artem Zykovich; Ian Korf; David J Segal
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

10.  Optimization of minimum set of protein-DNA interactions: a quasi exact solution with minimum over-fitting.

Authors:  N A Temiz; A Trapp; O A Prokopyev; C J Camacho
Journal:  Bioinformatics       Date:  2009-12-04       Impact factor: 6.937

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