Literature DB >> 19441086

Rapid gynogenetic mapping of Xenopus tropicalis mutations to chromosomes.

Mustafa K Khokha1, Vladimir Krylov, Michael J Reilly, Joseph G Gall, Dipankan Bhattacharya, Chung Yan J Cheung, Sarah Kaufman, Dang Khoa Lam, Jaroslav Macha, Catherine Ngo, Neha Prakash, Philip Schmidt, Tereza Tlapakova, Toral Trivedi, Lucie Tumova, Anita Abu-Daya, Timothy Geach, Elisenda Vendrell, Holly Ironfield, Ludivine Sinzelle, Amy K Sater, Dan E Wells, Richard M Harland, Lyle B Zimmerman.   

Abstract

Pilot forward genetic screens in Xenopus tropicalis have isolated over 60 recessive mutations. Here we present a simple method for mapping mutations to chromosomes using gynogenesis and centromeric markers. When coupled with available genomic resources, gross mapping facilitates evaluation of candidate genes as well as higher resolution linkage studies. Using gynogenesis, we have mapped the genetic locations of the 10 X. tropicalis centromeres, and performed fluorescence in situ hybridization to validate these locations cytologically. We demonstrate the use of this very small set of centromeric markers to map mutations efficiently to specific chromosomes. Developmental Dynamics 238:1398-1406, 2009. (c) 2009 Wiley-Liss, Inc.

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Year:  2009        PMID: 19441086      PMCID: PMC2962985          DOI: 10.1002/dvdy.21965

Source DB:  PubMed          Journal:  Dev Dyn        ISSN: 1058-8388            Impact factor:   3.780


  38 in total

Review 1.  Preservation of duplicate genes by complementary, degenerative mutations.

Authors:  A Force; M Lynch; F B Pickett; A Amores; Y L Yan; J Postlethwait
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

2.  Crossing-over and interference in a multiply marked chromosome arm of Neurospora.

Authors:  D D PERKINS
Journal:  Genetics       Date:  1962-09       Impact factor: 4.562

3.  Segregation analyses and gene-centromere distances in zebrafish.

Authors:  G Streisinger; F Singer; C Walker; D Knauber; N Dower
Journal:  Genetics       Date:  1986-02       Impact factor: 4.562

4.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

5.  Diploid gynogenesis in Xenopus laevis and the localization with respect to the centromere of the gene for periodic albinism ap.

Authors:  C H Thiébaud; B Colombelli; W P Müller
Journal:  J Embryol Exp Morphol       Date:  1984-10

6.  Identification of mutants in inbred Xenopus tropicalis.

Authors:  Timothy C Grammer; Mustafa K Khokha; Maura A Lane; Kentson Lam; Richard M Harland
Journal:  Mech Dev       Date:  2005-03       Impact factor: 1.882

7.  Techniques and probes for the study of Xenopus tropicalis development.

Authors:  Mustafa K Khokha; Christina Chung; Erika L Bustamante; Lisa W K Gaw; Kristin A Trott; Joanna Yeh; Nancy Lim; Jennifer C Y Lin; Nicola Taverner; Enrique Amaya; Nancy Papalopulu; James C Smith; Aaron M Zorn; Richard M Harland; Timothy C Grammer
Journal:  Dev Dyn       Date:  2002-12       Impact factor: 3.780

8.  Microsatellite-centromere mapping in the zebrafish (Danio rerio).

Authors:  E J Kauffman; E E Gestl; D J Kim; C Walker; J M Hite; G Yan; P K Rogan; S L Johnson; K C Cheng
Journal:  Genomics       Date:  1995-11-20       Impact factor: 5.736

9.  The expression of antibody diversity in natural and laboratory-made polyploid individuals of the clawed toad Xenopus.

Authors:  L Du Pasquier; B Blomberg
Journal:  Immunogenetics       Date:  1982-03       Impact factor: 2.846

Review 10.  Decoding development in Xenopus tropicalis.

Authors:  Chris Showell; Frank L Conlon
Journal:  Genesis       Date:  2007-06       Impact factor: 2.487

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  25 in total

Review 1.  The hitchhiker's guide to Xenopus genetics.

Authors:  Anita Abu-Daya; Mustafa K Khokha; Lyle B Zimmerman
Journal:  Genesis       Date:  2012-02-16       Impact factor: 2.487

2.  Preparation of Xenopus tropicalis whole chromosome painting probes using laser microdissection and reconstruction of X. laevis tetraploid karyotype by Zoo-FISH.

Authors:  Vladimir Krylov; Svatava Kubickova; Jiri Rubes; Jaroslav Macha; Tereza Tlapakova; Eva Seifertova; Natasa Sebkova
Journal:  Chromosome Res       Date:  2010-06       Impact factor: 5.239

Review 3.  Xenopus research: metamorphosed by genetics and genomics.

Authors:  Richard M Harland; Robert M Grainger
Journal:  Trends Genet       Date:  2011-10-01       Impact factor: 11.639

4.  Characterization of a Xenopus tropicalis endogenous retrovirus with developmental and stress-dependent expression.

Authors:  L Sinzelle; Q Carradec; E Paillard; O J Bronchain; N Pollet
Journal:  J Virol       Date:  2010-12-15       Impact factor: 5.103

5.  Evolution of the B7 family: co-evolution of B7H6 and NKp30, identification of a new B7 family member, B7H7, and of B7's historical relationship with the MHC.

Authors:  Martin F Flajnik; Tereza Tlapakova; Michael F Criscitiello; Vladimir Krylov; Yuko Ohta
Journal:  Immunogenetics       Date:  2012-04-11       Impact factor: 2.846

6.  Paralysis and delayed Z-disc formation in the Xenopus tropicalis unc45b mutant dicky ticker.

Authors:  Timothy J Geach; Lyle B Zimmerman
Journal:  BMC Dev Biol       Date:  2010-07-16       Impact factor: 1.978

7.  Coexistence of Y, W, and Z sex chromosomes in Xenopus tropicalis.

Authors:  Álvaro S Roco; Allen W Olmstead; Sigmund J Degitz; Tosikazu Amano; Lyle B Zimmerman; Mónica Bullejos
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

8.  Sp8 regulates inner ear development.

Authors:  Hyeyoung A Chung; Sofia Medina-Ruiz; Richard M Harland
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-10       Impact factor: 11.205

9.  Absence of heartbeat in the Xenopus tropicalis mutation muzak is caused by a nonsense mutation in cardiac myosin myh6.

Authors:  Anita Abu-Daya; Amy K Sater; Dan E Wells; Timothy J Mohun; Lyle B Zimmerman
Journal:  Dev Biol       Date:  2009-09-19       Impact factor: 3.582

10.  Remobilization of Tol2 transposons in Xenopus tropicalis.

Authors:  Donald A Yergeau; Clair M Kelley; Emin Kuliyev; Haiqing Zhu; Amy K Sater; Dan E Wells; Paul E Mead
Journal:  BMC Dev Biol       Date:  2010-01-22       Impact factor: 1.978

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