Literature DB >> 17549727

Decoding development in Xenopus tropicalis.

Chris Showell1, Frank L Conlon.   

Abstract

Xenopus tropicalis is rapidly being adopted as a model organism for developmental biology research and has enormous potential for increasing our understanding of how embryonic development is controlled. In recent years there has been a well-organized initiative within the Xenopus community, funded largely through the support of the National Institutes of Health in the US, to develop X. tropicalis as a new genetic model system with the potential to impact diverse fields of research. Concerted efforts have been made both to adapt established methodologies for use in X. tropicalis and to develop new techniques. A key resource to come out of these efforts is the genome sequence, produced by the US Department of Energy's Joint Genome Institute and made freely available to the community in draft form for the past three years. In this review, we focus on how advances in X. tropicalis genetics coupled with the sequencing of its genome are likely to form a foundation from which we can build a better understanding of the genetic control of vertebrate development and why, when we already have other vertebrate genetic models, we should want to develop genetic analysis in the frog. (c) 2007 Wiley-Liss, Inc.

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Year:  2007        PMID: 17549727      PMCID: PMC2668205          DOI: 10.1002/dvg.20286

Source DB:  PubMed          Journal:  Genesis        ISSN: 1526-954X            Impact factor:   2.487


  52 in total

1.  Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.

Authors:  Benjamin P Berman; Yutaka Nibu; Barret D Pfeiffer; Pavel Tomancak; Susan E Celniker; Michael Levine; Gerald M Rubin; Michael B Eisen
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-22       Impact factor: 11.205

2.  Inhibition of zebrafish fgf8 pre-mRNA splicing with morpholino oligos: a quantifiable method for gene knockdown.

Authors:  B W Draper; P A Morcos; C B Kimmel
Journal:  Genesis       Date:  2001-07       Impact factor: 2.487

3.  Target-selected inactivation of the zebrafish rag1 gene.

Authors:  Erno Wienholds; Stefan Schulte-Merker; Brigitte Walderich; Ronald H A Plasterk
Journal:  Science       Date:  2002-07-05       Impact factor: 47.728

4.  Inducible control of tissue-specific transgene expression in Xenopus tropicalis transgenic lines.

Authors:  Jeiwook Chae; Lyle B Zimmerman; Robert M Grainger
Journal:  Mech Dev       Date:  2002-09       Impact factor: 1.882

5.  Genotype-based screen for ENU-induced mutations in mouse embryonic stem cells.

Authors:  Y Chen; D Yee; K Dains; A Chatterjee; J Cavalcoli; E Schneider; J Om; R P Woychik; T Magnuson
Journal:  Nat Genet       Date:  2000-03       Impact factor: 38.330

6.  Locating potential enhancer elements by comparative genomics using the EEL software.

Authors:  Kimmo Palin; Jussi Taipale; Esko Ukkonen
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

7.  Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly.

Authors:  Laura A Lettice; Taizo Horikoshi; Simon J H Heaney; Marijke J van Baren; Herma C van der Linde; Guido J Breedveld; Marijke Joosse; Nurten Akarsu; Ben A Oostra; Naoto Endo; Minoru Shibata; Mikio Suzuki; Eiichi Takahashi; Toshikatsu Shinka; Yutaka Nakahori; Dai Ayusawa; Kazuhiko Nakabayashi; Stephen W Scherer; Peter Heutink; Robert E Hill; Sumihare Noji
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

8.  Xenopus tropicalis transgenic lines and their use in the study of embryonic induction.

Authors:  Nicolas Hirsch; Lyle B Zimmerman; Jessica Gray; Jeiwook Chae; Kristen L Curran; Marilyn Fisher; Hajime Ogino; Robert M Grainger
Journal:  Dev Dyn       Date:  2002-12       Impact factor: 3.780

9.  Beta-catenin signaling activity dissected in the early Xenopus embryo: a novel antisense approach.

Authors:  J Heasman; M Kofron; C Wylie
Journal:  Dev Biol       Date:  2000-06-01       Impact factor: 3.582

10.  Mutations in PTPN11, encoding the protein tyrosine phosphatase SHP-2, cause Noonan syndrome.

Authors:  M Tartaglia; E L Mehler; R Goldberg; G Zampino; H G Brunner; H Kremer; I van der Burgt; A H Crosby; A Ion; S Jeffery; K Kalidas; M A Patton; R S Kucherlapati; B D Gelb
Journal:  Nat Genet       Date:  2001-12       Impact factor: 38.330

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  10 in total

1.  An interspecies heart-to-heart: Using Xenopus to uncover the genetic basis of congenital heart disease.

Authors:  Alexandra MacColl Garfinkel; Mustafa K Khokha
Journal:  Curr Pathobiol Rep       Date:  2017-05-06

Review 2.  Expanding the genetic toolkit in Xenopus: Approaches and opportunities for human disease modeling.

Authors:  Panna Tandon; Frank Conlon; J David Furlow; Marko E Horb
Journal:  Dev Biol       Date:  2016-04-22       Impact factor: 3.582

3.  The western clawed frog (Xenopus tropicalis): an emerging vertebrate model for developmental genetics and environmental toxicology.

Authors:  Chris Showell; Frank L Conlon
Journal:  Cold Spring Harb Protoc       Date:  2009-09

Review 4.  Xenopus: An emerging model for studying congenital heart disease.

Authors:  Erin Kaltenbrun; Panna Tandon; Nirav M Amin; Lauren Waldron; Chris Showell; Frank L Conlon
Journal:  Birth Defects Res A Clin Mol Teratol       Date:  2011-04-28

5.  Rapid gynogenetic mapping of Xenopus tropicalis mutations to chromosomes.

Authors:  Mustafa K Khokha; Vladimir Krylov; Michael J Reilly; Joseph G Gall; Dipankan Bhattacharya; Chung Yan J Cheung; Sarah Kaufman; Dang Khoa Lam; Jaroslav Macha; Catherine Ngo; Neha Prakash; Philip Schmidt; Tereza Tlapakova; Toral Trivedi; Lucie Tumova; Anita Abu-Daya; Timothy Geach; Elisenda Vendrell; Holly Ironfield; Ludivine Sinzelle; Amy K Sater; Dan E Wells; Richard M Harland; Lyle B Zimmerman
Journal:  Dev Dyn       Date:  2009-06       Impact factor: 3.780

6.  Aging of Xenopus tropicalis eggs leads to deadenylation of a specific set of maternal mRNAs and loss of developmental potential.

Authors:  Anna Kosubek; Ludger Klein-Hitpass; Katrin Rademacher; Bernhard Horsthemke; Gerhart U Ryffel
Journal:  PLoS One       Date:  2010-10-22       Impact factor: 3.240

7.  Gene expression profiles of lens regeneration and development in Xenopus laevis.

Authors:  Erica L Malloch; Kimberly J Perry; Lisa Fukui; Verity R Johnson; Jason Wever; Caroline W Beck; Michael W King; Jonathan J Henry
Journal:  Dev Dyn       Date:  2009-09       Impact factor: 3.780

8.  A comparative survey of the frequency and distribution of polymorphism in the genome of Xenopus tropicalis.

Authors:  Chris Showell; Samantha Carruthers; Amanda Hall; Fernando Pardo-Manuel de Villena; Derek Stemple; Frank L Conlon
Journal:  PLoS One       Date:  2011-08-04       Impact factor: 3.240

9.  Remobilization of Sleeping Beauty transposons in the germline of Xenopus tropicalis.

Authors:  Donald A Yergeau; Clair M Kelley; Emin Kuliyev; Haiqing Zhu; Michelle R Johnson Hamlet; Amy K Sater; Dan E Wells; Paul E Mead
Journal:  Mob DNA       Date:  2011-11-24

Review 10.  Xenopus as a platform for discovery of genes relevant to human disease.

Authors:  Valentyna Kostiuk; Mustafa K Khokha
Journal:  Curr Top Dev Biol       Date:  2021-04-23       Impact factor: 4.897

  10 in total

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