Literature DB >> 19317544

Dipolar truncation in magic-angle spinning NMR recoupling experiments.

Marvin J Bayro1, Matthias Huber, Ramesh Ramachandran, Timothy C Davenport, Beat H Meier, Matthias Ernst, Robert G Griffin.   

Abstract

Quantitative solid-state NMR distance measurements in strongly coupled spin systems are often complicated due to the simultaneous presence of multiple noncommuting spin interactions. In the case of zeroth-order homonuclear dipolar recoupling experiments, the recoupled dipolar interaction between distant spins is attenuated by the presence of stronger couplings to nearby spins, an effect known as dipolar truncation. In this article, we quantitatively investigate the effect of dipolar truncation on the polarization-transfer efficiency of various homonuclear recoupling experiments with analytical theory, numerical simulations, and experiments. In particular, using selectively (13)C-labeled tripeptides, we compare the extent of dipolar truncation in model three-spin systems encountered in protein samples produced with uniform and alternating labeling. Our observations indicate that while the extent of dipolar truncation decreases in the absence of directly bonded nuclei, two-bond dipolar couplings can generate significant dipolar truncation of small, long-range couplings. Therefore, while alternating labeling alleviates the effects of dipolar truncation, and thus facilitates the application of recoupling experiments to large spin systems, it does not represent a complete solution to this outstanding problem.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19317544      PMCID: PMC4435003          DOI: 10.1063/1.3089370

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  40 in total

1.  Determination of multiple ***φ***-torsion angles in proteins by selective and extensive (13)C labeling and two-dimensional solid-state NMR.

Authors:  M Hong
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Protein structure determination by high-resolution solid-state NMR spectroscopy: application to microcrystalline ubiquitin.

Authors:  Stephan G Zech; A Joshua Wand; Ann E McDermott
Journal:  J Am Chem Soc       Date:  2005-06-22       Impact factor: 15.419

3.  Proton assisted insensitive nuclei cross polarization.

Authors:  Józef R Lewandowski; Gaël De Paëpe; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2007-01-31       Impact factor: 15.419

Review 4.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

5.  Multipole-multimode Floquet theory of rotational resonance width experiments: 13C-13C distance measurements in uniformly labeled solids.

Authors:  Ramesh Ramachandran; Józef R Lewandowski; Patrick C A van der Wel; Robert G Griffin
Journal:  J Chem Phys       Date:  2006-06-07       Impact factor: 3.488

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Supramolecular structure in full-length Alzheimer's beta-amyloid fibrils: evidence for a parallel beta-sheet organization from solid-state nuclear magnetic resonance.

Authors:  John J Balbach; Aneta T Petkova; Nathan A Oyler; Oleg N Antzutkin; David J Gordon; Stephen C Meredith; Robert Tycko
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

8.  13C-13C rotational resonance width distance measurements in uniformly 13C-labeled peptides.

Authors:  Ramesh Ramachandran; Vladimir Ladizhansky; Vikram S Bajaj; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

9.  Spin dynamics in the modulation frame: application to homonuclear recoupling in magic angle spinning solid-state NMR.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-03-28       Impact factor: 3.488

10.  Structure and conformation of linear peptides. III. Structure of glycyl-glycyl-L-valine.

Authors:  V Lalitha; E Subramanian; J Bordner
Journal:  Int J Pept Protein Res       Date:  1984-11
View more
  49 in total

1.  Simultaneous acquisition of PAR and PAIN spectra.

Authors:  Anders B Nielsen; Kathrin Székely; Julia Gath; Matthias Ernst; Niels Chr Nielsen; Beat H Meier
Journal:  J Biomol NMR       Date:  2012-02-28       Impact factor: 2.835

2.  Exploring Chromophore-Binding Pocket: High-Resolution Solid-State H-C Interfacial Correlation NMR Spectra with Windowed PMLG Scheme.

Authors:  Chen Song; Christina Lang; Jo Mailliet; Jon Hughes; Wolfgang Gärtner; Jörg Matysik
Journal:  Appl Magn Reson       Date:  2011-02-11       Impact factor: 0.831

3.  Protein resonance assignment at MAS frequencies approaching 100 kHz: a quantitative comparison of J-coupling and dipolar-coupling-based transfer methods.

Authors:  Susanne Penzel; Albert A Smith; Vipin Agarwal; Andreas Hunkeler; Mai-Liis Org; Ago Samoson; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2015-08-13       Impact factor: 2.835

4.  Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Authors:  Matthew T Eddy; Marina Belenky; Astrid C Sivertsen; Robert G Griffin; Judith Herzfeld
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

5.  Homonuclear mixing sequences for perdeuterated proteins.

Authors:  Kuo-Ying Huang; Ansgar B Siemer; Ann E McDermott
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

6.  Efficient band-selective homonuclear CO-CA cross-polarization in protonated proteins.

Authors:  Veniamin Chevelkov; Chaowei Shi; Hannes Klaus Fasshuber; Stefan Becker; Adam Lange
Journal:  J Biomol NMR       Date:  2013-08-08       Impact factor: 2.835

7.  PAIN with and without PAR: variants for third-spin assisted heteronuclear polarization transfer.

Authors:  Vipin Agarwal; Mariana Sardo; Ingo Scholz; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

8.  Determination of Long-Range Distances by Fast Magic-Angle-Spinning Radiofrequency-Driven 19F-19F Dipolar Recoupling NMR.

Authors:  Matthias Roos; Venkata S Mandala; Mei Hong
Journal:  J Phys Chem B       Date:  2018-09-27       Impact factor: 2.991

9.  Long-range correlations between aliphatic 13C nuclei in protein MAS NMR spectroscopy.

Authors:  Marvin J Bayro; Thorsten Maly; Neil R Birkett; Christopher M Dobson; Robert G Griffin
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

10.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.