Literature DB >> 14664610

13C-13C rotational resonance width distance measurements in uniformly 13C-labeled peptides.

Ramesh Ramachandran1, Vladimir Ladizhansky, Vikram S Bajaj, Robert G Griffin.   

Abstract

The rotational resonance width (R2W) experiment is a constant-time version of the rotational resonance (R2) experiment, in which the magnetization exchange is measured as a function of sample spinning frequency rather than the mixing time. The significant advantage of this experiment over conventional R2 is that both the dipolar coupling and the relaxation parameters can be independently and unambiguously extracted from the magnetization exchange profile. In this paper, we combine R2W with two-dimensional 13C-13C chemical shift correlation spectroscopy and demonstrate the utility of this technique for the site-specific measurement of multiple 13C-13C distances in uniformly labeled solids. The dipolar truncation effects, usually associated with distance measurements in uniformly labeled solids, are considerably attenuated in R2W experiments. Thus, R2W experiments are applicable to uniformly labeled biological systems. To validate this statement, multiple 13C-13C distances (in the range of 3-6 A) were determined in N-acetyl-[U-13C,15N]l-Val-l-Leu with an average precision of +/-0.5 A. Furthermore, the distance constraints extracted using a two-spin model agree well with the X-ray crystallographic data.

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Year:  2003        PMID: 14664610     DOI: 10.1021/ja037761x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  14 in total

1.  Accurate determination of interstrand distances and alignment in amyloid fibrils by magic angle spinning NMR.

Authors:  Marc A Caporini; Vikram S Bajaj; Mikhail Veshtort; Anthony Fitzpatrick; Cait E MacPhee; Michele Vendruscolo; Christopher M Dobson; Robert G Griffin
Journal:  J Phys Chem B       Date:  2010-10-28       Impact factor: 2.991

2.  Paramagnetic shifts in solid-state NMR of proteins to elicit structural information.

Authors:  Stéphane Balayssac; Ivano Bertini; Anusarka Bhaumik; Moreno Lelli; Claudio Luchinat
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-06       Impact factor: 11.205

3.  Targeted 13C-13C distance measurements in a microcrystalline protein via J-decoupled rotational resonance width measurements.

Authors:  Patrick C A van der Wel; Matthew T Eddy; Ramesh Ramachandran; Robert G Griffin
Journal:  Chemphyschem       Date:  2009-07-13       Impact factor: 3.102

4.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

5.  Intramolecular 1H-13C distance measurement in uniformly 13C, 15N labeled peptides by solid-state NMR.

Authors:  Shenhui Li; Yongchao Su; Mei Hong
Journal:  Solid State Nucl Magn Reson       Date:  2012-06-15       Impact factor: 2.293

6.  Compensated second-order recoupling: application to third spin assisted recoupling.

Authors:  Mathilde Giffard; Sabine Hediger; Józef R Lewandowski; Michel Bardet; Jean-Pierre Simorre; Robert G Griffin; Gaël De Paëpe
Journal:  Phys Chem Chem Phys       Date:  2012-04-18       Impact factor: 3.676

7.  Structural characterization of GNNQQNY amyloid fibrils by magic angle spinning NMR.

Authors:  Patrick C A van der Wel; Józef R Lewandowski; Robert G Griffin
Journal:  Biochemistry       Date:  2010-11-09       Impact factor: 3.162

8.  Spinning-rate encoded chemical shift correlations from rotational resonance solid-state NMR experiments.

Authors:  Jun Li; Patrick C A van der Wel
Journal:  J Magn Reson       Date:  2013-02-14       Impact factor: 2.229

9.  Dipolar truncation in magic-angle spinning NMR recoupling experiments.

Authors:  Marvin J Bayro; Matthias Huber; Ramesh Ramachandran; Timothy C Davenport; Beat H Meier; Matthias Ernst; Robert G Griffin
Journal:  J Chem Phys       Date:  2009-03-21       Impact factor: 3.488

10.  Proton assisted recoupling and protein structure determination.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-12-28       Impact factor: 3.488

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