Literature DB >> 21767478

Dynamic instability of a growing adsorbed polymorphic filament.

Stefano Zapperi1, L Mahadevan.   

Abstract

The intermittent transition between slow growth and rapid shrinkage in polymeric assemblies is termed "dynamic instability", a feature observed in a variety of biochemically distinct assemblies including microtubules, actin, and their bacterial analogs. The existence of this labile phase of a polymer has many functional consequences in cytoskeletal dynamics, and its repeated appearance suggests that it is relatively easy to evolve. Here, we consider the minimal ingredients for the existence of dynamic instability by considering a single polymorphic filament that grows by binding to a substrate, undergoes a conformation change, and may unbind as a consequence of the residual strains induced by this change. We identify two parameters that control the phase space of possibilities for the filament: a structural mechanical parameter that characterizes the ratio of the bond strengths along the filament to those with the substrate (or equivalently the ratio of longitudinal to lateral interactions in an assembly), and a kinetic parameter that characterizes the ratio of timescales for growth and conformation change. In the deterministic limit, these parameters serve to demarcate a region of uninterrupted growth from that of collapse. However, in the presence of disorder in either the structural or the kinetic parameter the growth and collapse phases can coexist where the filament can grow slowly, shrink rapidly, and transition between these phases, thus exhibiting dynamic instability. We exhibit the window for the existence of dynamic instability in a phase diagram that allows us to quantify the evolvability of this labile phase.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Mesh:

Year:  2011        PMID: 21767478      PMCID: PMC3136764          DOI: 10.1016/j.bpj.2011.04.056

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  20 in total

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3.  Microtubule's conformational cap.

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5.  A theory of microtubule catastrophes and their regulation.

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7.  Dynamic instability of microtubule growth.

Authors:  T Mitchison; M Kirschner
Journal:  Nature       Date:  1984 Nov 15-21       Impact factor: 49.962

8.  Structural changes at microtubule ends accompanying GTP hydrolysis: information from a slowly hydrolyzable analogue of GTP, guanylyl (alpha,beta)methylenediphosphonate.

Authors:  T Müller-Reichert; D Chrétien; F Severin; A A Hyman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-03-31       Impact factor: 11.205

9.  Dynamics of an idealized model of microtubule growth and catastrophe.

Authors:  T Antal; P L Krapivsky; S Redner; M Mailman; B Chakraborty
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-10-10

10.  Modeling elastic properties of microtubule tips and walls.

Authors:  I M Jánosi; D Chrétien; H Flyvbjerg
Journal:  Eur Biophys J       Date:  1998       Impact factor: 1.733

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  5 in total

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Authors:  Siyuan Wang; Ned S Wingreen
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

3.  Statistical mechanics provides novel insights into microtubule stability and mechanism of shrinkage.

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4.  Kinetic stability analysis of protein assembly on the center manifold around the critical point.

Authors:  Tatsuaki Tsuruyama
Journal:  BMC Syst Biol       Date:  2017-02-02

5.  Mechanics and kinetics of dynamic instability.

Authors:  Thomas Ct Michaels; Shuo Feng; Haiyi Liang; L Mahadevan
Journal:  Elife       Date:  2020-05-11       Impact factor: 8.140

  5 in total

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