Literature DB >> 19272988

A continuous STAPLE for scalar, vector, and tensor images: an application to DTI analysis.

Olivier Commowick1, Simon K Warfield.   

Abstract

The comparison of images of a patient to a reference standard may enable the identification of structural brain changes. These comparisons may involve the use of vector or tensor images (i.e., 3-D images for which each voxel can be represented as an RN vector) such as diffusion tensor images (DTI) or transformations. The recent introduction of the Log-Euclidean framework for diffeomorphisms and tensors has greatly simplified the use of these images by allowing all the computations to be performed on a vector-space. However, many sources can result in a bias in the images, including disease or imaging artifacts. In order to estimate and compensate for these sources of variability, we developed a new algorithm, called continuous STAPLE, that estimates the reference standard underlying a set of vector images. This method, based on an expectation-maximization method similar in principle to the validation method STAPLE, also estimates for each image a set of parameters characterizing their bias and variance with respect to the reference standard. We demonstrate how to use these parameters for the detection of atypical images or outliers in the population under study. We identified significant differences between the tensors of diffusion images of multiple sclerosis patients and those of control subjects in the vicinity of lesions.

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Mesh:

Year:  2008        PMID: 19272988      PMCID: PMC2854588          DOI: 10.1109/TMI.2008.2010438

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  23 in total

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Authors:  D Rueckert; L I Sonoda; C Hayes; D L Hill; M O Leach; D J Hawkes
Journal:  IEEE Trans Med Imaging       Date:  1999-08       Impact factor: 10.048

2.  Automatic detection and segmentation of evolving processes in 3D medical images: Application to multiple sclerosis.

Authors:  David Rey; Gérard Subsol; Hervé Delingette; Nicholas Ayache
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

3.  Nonrigid registration of 3D tensor medical data.

Authors:  J Ruiz-Alzola; C-F Westin; S K Warfield; C Alberola; S Maier; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

Review 4.  Processing and visualization for diffusion tensor MRI.

Authors:  C-F Westin; S E Maier; H Mamata; A Nabavi; F A Jolesz; R Kikinis
Journal:  Med Image Anal       Date:  2002-06       Impact factor: 8.545

5.  Characterizing volume and surface deformations in an atlas framework: theory, applications, and implementation.

Authors:  Roger P Woods
Journal:  Neuroimage       Date:  2003-03       Impact factor: 6.556

6.  Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration.

Authors:  Daniel Rueckert; Alejandro F Frangi; Julia A Schnabel
Journal:  IEEE Trans Med Imaging       Date:  2003-08       Impact factor: 10.048

7.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation.

Authors:  Simon K Warfield; Kelly H Zou; William M Wells
Journal:  IEEE Trans Med Imaging       Date:  2004-07       Impact factor: 10.048

8.  Fluid registration of diffusion tensor images using information theory.

Authors:  M C Chiang; A D Leow; A D Klunder; R A Dutton; M Barysheva; S E Rose; K L McMahon; G I de Zubicaray; A W Toga; P M Thompson
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

9.  Multi-modal volume registration by maximization of mutual information.

Authors:  W M Wells; P Viola; H Atsumi; S Nakajima; R Kikinis
Journal:  Med Image Anal       Date:  1996-03       Impact factor: 8.545

Review 10.  Fast robust automated brain extraction.

Authors:  Stephen M Smith
Journal:  Hum Brain Mapp       Date:  2002-11       Impact factor: 5.038

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  16 in total

1.  Foibles, follies, and fusion: web-based collaboration for medical image labeling.

Authors:  Bennett A Landman; Andrew J Asman; Andrew G Scoggins; John A Bogovic; Joshua A Stein; Jerry L Prince
Journal:  Neuroimage       Date:  2011-08-02       Impact factor: 6.556

2.  Validating retinal fundus image analysis algorithms: issues and a proposal.

Authors:  Emanuele Trucco; Alfredo Ruggeri; Thomas Karnowski; Luca Giancardo; Edward Chaum; Jean Pierre Hubschman; Bashir Al-Diri; Carol Y Cheung; Damon Wong; Michael Abràmoff; Gilbert Lim; Dinesh Kumar; Philippe Burlina; Neil M Bressler; Herbert F Jelinek; Fabrice Meriaudeau; Gwénolé Quellec; Tom Macgillivray; Bal Dhillon
Journal:  Invest Ophthalmol Vis Sci       Date:  2013-05-01       Impact factor: 4.799

3.  Robust statistical fusion of image labels.

Authors:  Bennett A Landman; Andrew J Asman; Andrew G Scoggins; John A Bogovic; Fangxu Xing; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2011-10-14       Impact factor: 10.048

4.  A logarithmic opinion pool based STAPLE algorithm for the fusion of segmentations with associated reliability weights.

Authors:  Alireza Akhondi-Asl; Lennox Hoyte; Mark E Lockhart; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2014-06-12       Impact factor: 10.048

5.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

6.  Expert-driven label fusion in multi-atlas-based segmentation of the prostate using weighted atlases.

Authors:  T R Langerak; U A van der Heide; A N T J Kotte; F F Berendsen; M van Vulpen; J P W Pluim
Journal:  Int J Comput Assist Radiol Surg       Date:  2013-04-02       Impact factor: 2.924

7.  Falx Cerebri Segmentation via Multi-atlas Boundary Fusion.

Authors:  Jeffrey Glaister; Aaron Carass; Dzung L Pham; John A Butman; Jerry L Prince
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

8.  Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly.

Authors:  Ali Gholipour; Alireza Akhondi-Asl; Judy A Estroff; Simon K Warfield
Journal:  Neuroimage       Date:  2012-02-10       Impact factor: 6.556

9.  A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images.

Authors:  Avan Suinesiaputra; Brett R Cowan; Ahmed O Al-Agamy; Mustafa A Elattar; Nicholas Ayache; Ahmed S Fahmy; Ayman M Khalifa; Pau Medrano-Gracia; Marie-Pierre Jolly; Alan H Kadish; Daniel C Lee; Ján Margeta; Simon K Warfield; Alistair A Young
Journal:  Med Image Anal       Date:  2013-09-13       Impact factor: 8.545

10.  Non-local robust detection of DTI white matter differences with small databases.

Authors:  Olivier Commowick; Aymeric Stamm
Journal:  Med Image Comput Comput Assist Interv       Date:  2012
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