Literature DB >> 12391568

Fast robust automated brain extraction.

Stephen M Smith1.   

Abstract

An automated method for segmenting magnetic resonance head images into brain and non-brain has been developed. It is very robust and accurate and has been tested on thousands of data sets from a wide variety of scanners and taken with a wide variety of MR sequences. The method, Brain Extraction Tool (BET), uses a deformable model that evolves to fit the brain's surface by the application of a set of locally adaptive model forces. The method is very fast and requires no preregistration or other pre-processing before being applied. We describe the new method and give examples of results and the results of extensive quantitative testing against "gold-standard" hand segmentations, and two other popular automated methods. Copyright 2002 Wiley-Liss, Inc.

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Mesh:

Year:  2002        PMID: 12391568      PMCID: PMC6871816          DOI: 10.1002/hbm.10062

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  13 in total

1.  Segmentation of brain MR images through a hidden Markov random field model and the expectation-maximization algorithm.

Authors:  Y Zhang; M Brady; S Smith
Journal:  IEEE Trans Med Imaging       Date:  2001-01       Impact factor: 10.048

2.  Fast, accurate, and reproducible automatic segmentation of the brain in T1-weighted volume MRI data.

Authors:  L Lemieux; G Hagemann; K Krakow; F G Woermann
Journal:  Magn Reson Med       Date:  1999-07       Impact factor: 4.668

Review 3.  Alignment of magnetic-resonance brain datasets with the stereotactical coordinate system.

Authors:  F Kruggel; D Yves von Cramon
Journal:  Med Image Anal       Date:  1999-06       Impact factor: 8.545

4.  A global optimisation method for robust affine registration of brain images.

Authors:  M Jenkinson; S Smith
Journal:  Med Image Anal       Date:  2001-06       Impact factor: 8.545

5.  Normalized accurate measurement of longitudinal brain change.

Authors:  S M Smith; N De Stefano; M Jenkinson; P M Matthews
Journal:  J Comput Assist Tomogr       Date:  2001 May-Jun       Impact factor: 1.826

6.  Accurate, robust, and automated longitudinal and cross-sectional brain change analysis.

Authors:  Stephen M Smith; Yongyue Zhang; Mark Jenkinson; Jacqueline Chen; P M Matthews; Antonio Federico; Nicola De Stefano
Journal:  Neuroimage       Date:  2002-09       Impact factor: 6.556

7.  Interactive 3D segmentation of MRI and CT volumes using morphological operations.

Authors:  K H Höhne; W A Hanson
Journal:  J Comput Assist Tomogr       Date:  1992 Mar-Apr       Impact factor: 1.826

8.  3-D segmentation of MR images of the head for 3-D display.

Authors:  M Bomans; K H Hohne; U Tiede; M Riemer
Journal:  IEEE Trans Med Imaging       Date:  1990       Impact factor: 10.048

9.  Cortical surface-based analysis. I. Segmentation and surface reconstruction.

Authors:  A M Dale; B Fischl; M I Sereno
Journal:  Neuroimage       Date:  1999-02       Impact factor: 6.556

10.  Surface-based labeling of cortical anatomy using a deformable atlas.

Authors:  S Sandor; R Leahy
Journal:  IEEE Trans Med Imaging       Date:  1997-02       Impact factor: 10.048

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  2000 in total

1.  Multi-site characterization of an fMRI working memory paradigm: reliability of activation indices.

Authors:  Anastasia Yendiki; Douglas N Greve; Stuart Wallace; Mark Vangel; Jeremy Bockholt; Bryon A Mueller; Vince Magnotta; Nancy Andreasen; Dara S Manoach; Randy L Gollub
Journal:  Neuroimage       Date:  2010-05-05       Impact factor: 6.556

2.  Neuroelectromagnetic forward head modeling toolbox.

Authors:  Zeynep Akalin Acar; Scott Makeig
Journal:  J Neurosci Methods       Date:  2010-05-08       Impact factor: 2.390

3.  Differences in Brain Architecture in Remote Mild Traumatic Brain Injury.

Authors:  Aishwarya Rajesh; Gillian E Cooke; Jim M Monti; Andrew Jahn; Ana M Daugherty; Neal J Cohen; Arthur F Kramer
Journal:  J Neurotrauma       Date:  2017-10-27       Impact factor: 5.269

4.  Disruption of network for visual perception of natural motion in primary dystonia.

Authors:  Koji Fujita; Wataru Sako; An Vo; Susan B Bressman; David Eidelberg
Journal:  Hum Brain Mapp       Date:  2017-12-06       Impact factor: 5.038

5.  Initially intact neural responses to pain in autism are diminished during sustained pain.

Authors:  Michelle D Failla; Estephan J Moana-Filho; Greg K Essick; Grace T Baranek; Baxter P Rogers; Carissa J Cascio
Journal:  Autism       Date:  2017-05-17

6.  Aberrant White Matter Microstructure in Children and Adolescents With the Subtype of Prader-Willi Syndrome at High Risk for Psychosis.

Authors:  Akvile Lukoshe; Gerbrich E van den Bosch; Aad van der Lugt; Steven A Kushner; Anita C Hokken-Koelega; Tonya White
Journal:  Schizophr Bull       Date:  2017-09-01       Impact factor: 9.306

7.  Frontal lobe epilepsy alters functional connections within the brain's motor network: a resting-state fMRI study.

Authors:  Kristine Elizabeth Woodward; Ismael Gaxiola-Valdez; Bradley Gordon Goodyear; Paolo Federico
Journal:  Brain Connect       Date:  2014-03-06

8.  Adaptive prior probability and spatial temporal intensity change estimation for segmentation of the one-year-old human brain.

Authors:  Sun Hyung Kim; Vladimir S Fonov; Cheryl Dietrich; Clement Vachet; Heather C Hazlett; Rachel G Smith; Michael M Graves; Joseph Piven; John H Gilmore; Stephen R Dager; Robert C McKinstry; Sarah Paterson; Alan C Evans; D Louis Collins; Guido Gerig; Martin Andreas Styner
Journal:  J Neurosci Methods       Date:  2012-09-29       Impact factor: 2.390

9.  Functional neural correlates of emotional expression processing deficits in behavioural variant frontotemporal dementia.

Authors:  Karim Virani; Sarah Jesso; Andrew Kertesz; Derek Mitchell; Elizabeth Finger
Journal:  J Psychiatry Neurosci       Date:  2013-05       Impact factor: 6.186

10.  Dynamic tractography: Integrating cortico-cortical evoked potentials and diffusion imaging.

Authors:  Brian H Silverstein; Eishi Asano; Ayaka Sugiura; Masaki Sonoda; Min-Hee Lee; Jeong-Won Jeong
Journal:  Neuroimage       Date:  2020-04-12       Impact factor: 6.556

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