Literature DB >> 24951681

A logarithmic opinion pool based STAPLE algorithm for the fusion of segmentations with associated reliability weights.

Alireza Akhondi-Asl, Lennox Hoyte, Mark E Lockhart, Simon K Warfield.   

Abstract

Pelvic floor dysfunction is common in women after childbirth and precise segmentation of magnetic resonance images (MRI) of the pelvic floor may facilitate diagnosis and treatment of patients. However, because of the complexity of its structures, manual segmentation of the pelvic floor is challenging and suffers from high inter and intra-rater variability of expert raters. Multiple template fusion algorithms are promising segmentation techniques for these types of applications, but they have been limited by imperfections in the alignment of templates to the target, and by template segmentation errors. A number of algorithms sought to improve segmentation performance by combining image intensities and template labels as two independent sources of information, carrying out fusion through local intensity weighted voting schemes. This class of approach is a form of linear opinion pooling, and achieves unsatisfactory performance for this application. We hypothesized that better decision fusion could be achieved by assessing the contribution of each template in comparison to a reference standard segmentation of the target image and developed a novel segmentation algorithm to enable automatic segmentation of MRI of the female pelvic floor. The algorithm achieves high performance by estimating and compensating for both imperfect registration of the templates to the target image and template segmentation inaccuracies. A local image similarity measure is used to infer a local reliability weight, which contributes to the fusion through a novel logarithmic opinion pooling. We evaluated our new algorithm in comparison to nine state-of-the-art segmentation methods and demonstrated our algorithm achieves the highest performance.

Entities:  

Mesh:

Year:  2014        PMID: 24951681      PMCID: PMC4264575          DOI: 10.1109/TMI.2014.2329603

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  39 in total

1.  MR-based three-dimensional modeling of the normal pelvic floor in women: quantification of muscle mass.

Authors:  J R Fielding; H Dumanli; A G Schreyer; S Okuda; D T Gering; K H Zou; R Kikinis; F A Jolesz
Journal:  AJR Am J Roentgenol       Date:  2000-03       Impact factor: 3.959

2.  Levator ani subtended volume: a novel parameter to evaluate levator ani muscle laxity in pelvic organ prolapse.

Authors:  Antonio Antunes Rodrigues; Renee Bassaly; Mona McCullough; H Leigh Terwilliger; Stuart Hart; Katheryne Downes; Lennox Hoyte
Journal:  Am J Obstet Gynecol       Date:  2011-10-12       Impact factor: 8.661

3.  Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE.

Authors:  Olivier Commowick; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

4.  Robust statistical fusion of image labels.

Authors:  Bennett A Landman; Andrew J Asman; Andrew G Scoggins; John A Bogovic; Fangxu Xing; Jerry L Prince
Journal:  IEEE Trans Med Imaging       Date:  2011-10-14       Impact factor: 10.048

5.  Reproducibility of dynamic MR imaging pelvic measurements: a multi-institutional study.

Authors:  Mark E Lockhart; Julia R Fielding; Holly E Richter; Linda Brubaker; Caryl G Salomon; Wen Ye; Christiane M Hakim; Clifford Y Wai; Alan H Stolpen; Anne M Weber
Journal:  Radiology       Date:  2008-09-16       Impact factor: 11.105

6.  Quantity and distribution of levator ani stretch during simulated vaginal childbirth.

Authors:  Lennox Hoyte; Margot S Damaser; Simon K Warfield; Giridhar Chukkapalli; Amitava Majumdar; Dong Ju Choi; Abhishek Trivedi; Petr Krysl
Journal:  Am J Obstet Gynecol       Date:  2008-06-02       Impact factor: 8.661

7.  Estimation of the prior distribution of ground truth in the STAPLE algorithm: an empirical Bayesian approach.

Authors:  Alireza Akhondi-Asl; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

8.  Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Authors:  Ralph O Suarez; Olivier Commowick; Sanjay P Prabhu; Simon K Warfield
Journal:  Neuroimage       Date:  2011-11-27       Impact factor: 6.556

9.  Simultaneous truth and performance level estimation through fusion of probabilistic segmentations.

Authors:  Alireza Akhondi-Asl; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2013-06-04       Impact factor: 10.048

10.  Fast and robust multi-atlas segmentation of brain magnetic resonance images.

Authors:  Jyrki Mp Lötjönen; Robin Wolz; Juha R Koikkalainen; Lennart Thurfjell; Gunhild Waldemar; Hilkka Soininen; Daniel Rueckert
Journal:  Neuroimage       Date:  2009-10-24       Impact factor: 6.556

View more
  20 in total

1.  Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information.

Authors:  Subrahmanyam Gorthi; Alireza Akhondi-Asl; Simon K Warfield
Journal:  IEEE J Biomed Health Inform       Date:  2015-04-30       Impact factor: 5.772

2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

3.  Simultaneous total intracranial volume and posterior fossa volume estimation using multi-atlas label fusion.

Authors:  Yuankai Huo; Andrew J Asman; Andrew J Plassard; Bennett A Landman
Journal:  Hum Brain Mapp       Date:  2016-10-11       Impact factor: 5.038

4.  Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging.

Authors:  Jurriaan M Peters; Anna K Prohl; Xavier K Tomas-Fernandez; Maxime Taquet; Benoit Scherrer; Sanjay P Prabhu; Hart G Lidov; Jolene M Singh; Floor E Jansen; Kees P J Braun; Mustafa Sahin; Simon K Warfield; Aymeric Stamm
Journal:  Neurology       Date:  2015-10-02       Impact factor: 9.910

5.  A hybrid approach based on logistic classification and iterative contrast enhancement algorithm for hyperintense multiple sclerosis lesion segmentation.

Authors:  Antonio Carlos da Silva Senra Filho
Journal:  Med Biol Eng Comput       Date:  2017-11-18       Impact factor: 2.602

6.  Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET).

Authors:  Maxime Chamberland; Benoit Scherrer; Sanjay P Prabhu; Joseph Madsen; David Fortin; Kevin Whittingstall; Maxime Descoteaux; Simon K Warfield
Journal:  Hum Brain Mapp       Date:  2016-09-20       Impact factor: 5.038

Review 7.  Biomechanical modeling and computer simulation of the brain during neurosurgery.

Authors:  Karol Miller; Grand R Joldes; George Bourantas; Simon K Warfield; Damon E Hyde; Ron Kikinis; Adam Wittek
Journal:  Int J Numer Method Biomed Eng       Date:  2019-09-05       Impact factor: 2.747

Review 8.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

9.  A Novel Public MR Image Dataset of Multiple Sclerosis Patients With Lesion Segmentations Based on Multi-rater Consensus.

Authors:  Žiga Lesjak; Alfiia Galimzianova; Aleš Koren; Matej Lukin; Franjo Pernuš; Boštjan Likar; Žiga Špiclin
Journal:  Neuroinformatics       Date:  2018-01

10.  Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.

Authors:  Olivier Commowick; Audrey Istace; Michaël Kain; Baptiste Laurent; Florent Leray; Mathieu Simon; Sorina Camarasu Pop; Pascal Girard; Roxana Améli; Jean-Christophe Ferré; Anne Kerbrat; Thomas Tourdias; Frédéric Cervenansky; Tristan Glatard; Jérémy Beaumont; Senan Doyle; Florence Forbes; Jesse Knight; April Khademi; Amirreza Mahbod; Chunliang Wang; Richard McKinley; Franca Wagner; John Muschelli; Elizabeth Sweeney; Eloy Roura; Xavier Lladó; Michel M Santos; Wellington P Santos; Abel G Silva-Filho; Xavier Tomas-Fernandez; Hélène Urien; Isabelle Bloch; Sergi Valverde; Mariano Cabezas; Francisco Javier Vera-Olmos; Norberto Malpica; Charles Guttmann; Sandra Vukusic; Gilles Edan; Michel Dojat; Martin Styner; Simon K Warfield; François Cotton; Christian Barillot
Journal:  Sci Rep       Date:  2018-09-12       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.