Literature DB >> 21839181

Foibles, follies, and fusion: web-based collaboration for medical image labeling.

Bennett A Landman1, Andrew J Asman, Andrew G Scoggins, John A Bogovic, Joshua A Stein, Jerry L Prince.   

Abstract

Labels that identify specific anatomical and functional structures within medical images are essential to the characterization of the relationship between structure and function in many scientific and clinical studies. Automated methods that allow for high throughput have not yet been developed for all anatomical targets or validated for exceptional anatomies, and manual labeling remains the gold standard in many cases. However, manual placement of labels within a large image volume such as that obtained using magnetic resonance imaging (MRI) is exceptionally challenging, resource intensive, and fraught with intra- and inter-rater variability. The use of statistical methods to combine labels produced by multiple raters has grown significantly in popularity, in part, because it is thought that by estimating and accounting for rater reliability estimates of the true labels will be more accurate. This paper demonstrates the performance of a class of these statistical label combination methodologies using real-world data contributed by minimally trained human raters. The consistency of the statistical estimates, the accuracy compared to the individual observations, and the variability of both the estimates and the individual observations with respect to the number of labels are presented. It is demonstrated that statistical fusion successfully combines label information using data from online (Internet-based) collaborations among minimally trained raters. This first successful demonstration of a statistically based approach using minimally trained raters opens numerous possibilities for very large scale efforts in collaboration. Extension and generalization of these technologies for new applications will certainly present fascinating areas for continuing research.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21839181      PMCID: PMC3195954          DOI: 10.1016/j.neuroimage.2011.07.085

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  18 in total

1.  Performance-based classifier combination in atlas-based image segmentation using expectation-maximization parameter estimation.

Authors:  Torsten Rohlfing; Daniel B Russakoff; Calvin R Maurer
Journal:  IEEE Trans Med Imaging       Date:  2004-08       Impact factor: 10.048

2.  Statistical Fusion of Surface Labels Provided by Multiple Raters.

Authors:  John A Bogovic; Bennett A Landman; Pierre-Louis Bazin; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2010-03-01

3.  Mindboggle: a scatterbrained approach to automate brain labeling.

Authors:  Arno Klein; Joy Hirsch
Journal:  Neuroimage       Date:  2004-11-24       Impact factor: 6.556

4.  Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE.

Authors:  Olivier Commowick; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

5.  Comparison of tissue segmentation algorithms in neuroimage analysis software tools.

Authors:  On Tsang; Ali Gholipour; Nasser Kehtarnavaz; Kaundinya Gopinath; Richard Briggs; Issa Panahi
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2008

6.  Human frontal cortex: an MRI-based parcellation method.

Authors:  B Crespo-Facorro; J J Kim; N C Andreasen; D S O'Leary; A K Wiser; J M Bailey; G Harris; V A Magnotta
Journal:  Neuroimage       Date:  1999-11       Impact factor: 6.556

7.  Intra- and inter-observer agreement of brain MRI lesion volume measurements in multiple sclerosis. A comparison of techniques.

Authors:  M Filippi; M A Horsfield; S Bressi; V Martinelli; C Baratti; P Reganati; A Campi; D H Miller; G Comi
Journal:  Brain       Date:  1995-12       Impact factor: 13.501

8.  Improving intersubject image registration using tissue-class information benefits robustness and accuracy of multi-atlas based anatomical segmentation.

Authors:  Rolf A Heckemann; Shiva Keihaninejad; Paul Aljabar; Daniel Rueckert; Joseph V Hajnal; Alexander Hammers
Journal:  Neuroimage       Date:  2010-01-28       Impact factor: 6.556

9.  A continuous STAPLE for scalar, vector, and tensor images: an application to DTI analysis.

Authors:  Olivier Commowick; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2008-12-09       Impact factor: 10.048

10.  Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.

Authors:  Arno Klein; Jesper Andersson; Babak A Ardekani; John Ashburner; Brian Avants; Ming-Chang Chiang; Gary E Christensen; D Louis Collins; James Gee; Pierre Hellier; Joo Hyun Song; Mark Jenkinson; Claude Lepage; Daniel Rueckert; Paul Thompson; Tom Vercauteren; Roger P Woods; J John Mann; Ramin V Parsey
Journal:  Neuroimage       Date:  2009-01-13       Impact factor: 6.556

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  10 in total

1.  COLLABORATIVE LABELING OF MALIGNANT GLIOMA.

Authors:  Zhoubing Xu; Andrew J Asman; Eesha Singh; Lola Chambless; Reid Thompson; Bennett A Landman
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012-12-31

2.  Approaching expert results using a hierarchical cerebellum parcellation protocol for multiple inexpert human raters.

Authors:  John A Bogovic; Bruno Jedynak; Rachel Rigg; Annie Du; Bennett A Landman; Jerry L Prince; Sarah H Ying
Journal:  Neuroimage       Date:  2012-09-04       Impact factor: 6.556

3.  Self-assessed performance improves statistical fusion of image labels.

Authors:  Frederick W Bryan; Zhoubing Xu; Andrew J Asman; Wade M Allen; Daniel S Reich; Bennett A Landman
Journal:  Med Phys       Date:  2014-03       Impact factor: 4.071

Review 4.  Whole-Organism Cellular Pathology: A Systems Approach to Phenomics.

Authors:  K C Cheng; S R Katz; A Y Lin; X Xin; Y Ding
Journal:  Adv Genet       Date:  2016-07-29       Impact factor: 1.944

5.  Formulating spatially varying performance in the statistical fusion framework.

Authors:  Andrew J Asman; Bennett A Landman
Journal:  IEEE Trans Med Imaging       Date:  2012-03-15       Impact factor: 10.048

6.  Collaborative Labeling of Malignant Glioma with WebMILL: A First Look.

Authors:  Eesha Singh; Andrew J Asman; Zhoubing Xu; Lola Chambless; Reid Thompson; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-04-05

Review 7.  Multi-atlas segmentation of biomedical images: A survey.

Authors:  Juan Eugenio Iglesias; Mert R Sabuncu
Journal:  Med Image Anal       Date:  2015-07-06       Impact factor: 8.545

8.  Segmentation of malignant gliomas through remote collaboration and statistical fusion.

Authors:  Zhoubing Xu; Andrew J Asman; Eesha Singh; Lola Chambless; Reid Thompson; Bennett A Landman
Journal:  Med Phys       Date:  2012-10       Impact factor: 4.071

9.  Non-local statistical label fusion for multi-atlas segmentation.

Authors:  Andrew J Asman; Bennett A Landman
Journal:  Med Image Anal       Date:  2012-11-29       Impact factor: 8.545

10.  Collective intelligence meets medical decision-making: the collective outperforms the best radiologist.

Authors:  Max Wolf; Jens Krause; Patricia A Carney; Andy Bogart; Ralf H J M Kurvers
Journal:  PLoS One       Date:  2015-08-12       Impact factor: 3.240

  10 in total

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