Literature DB >> 19244008

Joint sulcal detection on cortical surfaces with graphical models and boosted priors.

Yonggang Shi1, Zhuowen Tu, Allan L Reiss, Rebecca A Dutton, Agatha D Lee, Albert M Galaburda, Ivo Dinov, Paul M Thompson, Arthur W Toga.   

Abstract

In this paper, we propose an automated approach for the joint detection of major sulci on cortical surfaces. By representing sulci as nodes in a graphical model, we incorporate Markovian relations between sulci and formulate their detection as a maximum a posteriori (MAP) estimation problem over the joint space of major sulci. To make the inference tractable, a sample space with a finite number of candidate curves is automatically generated at each node based on the Hamilton-Jacobi skeleton of sulcal regions. Using the AdaBoost algorithm, we learn both individual and pairwise shape priors of sulcal curves from training data, which are then used to define potential functions in the graphical model based on the connection between AdaBoost and logistic regression. Finally belief propagation is used to perform the MAP inference and select the joint detection results from the sample spaces of candidate curves. In our experiments, we quantitatively validate our algorithm with manually traced curves and demonstrate the automatically detected curves can capture the main body of sulci very accurately. A comparison with independently detected results is also conducted to illustrate the advantage of the joint detection approach.

Entities:  

Mesh:

Year:  2009        PMID: 19244008      PMCID: PMC2754577          DOI: 10.1109/TMI.2008.2004402

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  23 in total

1.  Automated sulcal segmentation using watersheds on the cortical surface.

Authors:  Maryam E Rettmann; Xiao Han; Chenyang Xu; Jerry L Prince
Journal:  Neuroimage       Date:  2002-02       Impact factor: 6.556

2.  A system for the generation of curves on 3D brain images.

Authors:  A Bartesaghi; G Sapiro
Journal:  Hum Brain Mapp       Date:  2001-09       Impact factor: 5.038

3.  Extracting line representations of sulcal and gyral patterns in MR images of the human brain.

Authors:  G Lohmann
Journal:  IEEE Trans Med Imaging       Date:  1998-12       Impact factor: 10.048

4.  Extracting and Representing the Cortical Sulci.

Authors:  Yong Zhou; Paul M Thompson; Arthur W Toga
Journal:  IEEE Comput Graph Appl       Date:  1999-05       Impact factor: 2.088

5.  A Population-Average, Landmark- and Surface-based (PALS) atlas of human cerebral cortex.

Authors:  David C Van Essen
Journal:  Neuroimage       Date:  2005-09-19       Impact factor: 6.556

6.  Feature selection based on mutual information: criteria of max-dependency, max-relevance, and min-redundancy.

Authors:  Hanchuan Peng; Fuhui Long; Chris Ding
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-08       Impact factor: 6.226

7.  Direct cortical mapping via solving partial differential equations on implicit surfaces.

Authors:  Yonggang Shi; Paul M Thompson; Ivo Dinov; Stanley Osher; Arthur W Toga
Journal:  Med Image Anal       Date:  2007-02-16       Impact factor: 8.545

8.  Automated extraction of the cortical sulci based on a supervised learning approach.

Authors:  Zhuowen Tu; Songfeng Zheng; Alan L Yuille; Allan L Reiss; Rebecca A Dutton; Agatha D Lee; Albert M Galaburda; Ivo Dinov; Paul M Thompson; Arthur W Toga
Journal:  IEEE Trans Med Imaging       Date:  2007-04       Impact factor: 10.048

9.  Computing geodesic paths on manifolds.

Authors:  R Kimmel; J A Sethian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

10.  Finding parametric representations of the cortical sulci using an active contour model.

Authors:  M Vaillant; C Davatzikos
Journal:  Med Image Anal       Date:  1997-09       Impact factor: 8.545

View more
  12 in total

1.  The Center for Computational Biology: resources, achievements, and challenges.

Authors:  Arthur W Toga; Ivo D Dinov; Paul M Thompson; Roger P Woods; John D Van Horn; David W Shattuck; D Stott Parker
Journal:  J Am Med Inform Assoc       Date:  2011-11-10       Impact factor: 4.497

2.  Cortical shape analysis in the Laplace-Beltrami feature space.

Authors:  Yonggang Shi; Ivo Dinov; Arthur W Toga
Journal:  Med Image Comput Comput Assist Interv       Date:  2009

3.  Automated sulci identification via intrinsic modeling of cortical anatomy.

Authors:  Yonggang Shi; Bo Sun; Rongjie Lai; Ivo Dinov; Arthur W Toga
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

4.  Sulcal Depth-based Cortical Shape Analysis in Normal Healthy Control and Schizophrenia Groups.

Authors:  Ilwoo Lyu; Hakmook Kang; Neil D Woodward; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

5.  Constructing Statistically Unbiased Cortical Surface Templates Using Feature-Space Covariance.

Authors:  Prasanna Parvathaneni; Ilwoo Lyu; Yuankai Huo; Justin Blaber; Allison E Hainline; Hakmook Kang; Neil D Woodward; Bennett A Landman
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2018-03

6.  Gyral net: A new representation of cortical folding organization.

Authors:  Hanbo Chen; Yujie Li; Fangfei Ge; Gang Li; Dinggang Shen; Tianming Liu
Journal:  Med Image Anal       Date:  2017-07-15       Impact factor: 8.545

7.  Simultaneous Cortical Surface Labeling and Sulcal Curve Extraction.

Authors:  Zhen Yang; Aaron Carass; Chen Chen; Jerry L Prince
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2012-02-23

8.  Automatic Sulcal Curve Extraction with MRF Based Shape Prior.

Authors:  Zhen Yang; Aaron Carass; Jerry L Prince
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012-05

9.  Hierarchical spherical deformation for cortical surface registration.

Authors:  Ilwoo Lyu; Hakmook Kang; Neil D Woodward; Martin A Styner; Bennett A Landman
Journal:  Med Image Anal       Date:  2019-06-29       Impact factor: 8.545

10.  An invariant shape representation using the anisotropic Helmholtz equation.

Authors:  A A Joshi; S Ashrafulla; D W Shattuck; H Damasio; R M Leahy
Journal:  Med Image Comput Comput Assist Interv       Date:  2012
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.