Literature DB >> 22081221

The Center for Computational Biology: resources, achievements, and challenges.

Arthur W Toga1, Ivo D Dinov, Paul M Thompson, Roger P Woods, John D Van Horn, David W Shattuck, D Stott Parker.   

Abstract

The Center for Computational Biology (CCB) is a multidisciplinary program where biomedical scientists, engineers, and clinicians work jointly to combine modern mathematical and computational techniques, to perform phenotypic and genotypic studies of biological structure, function, and physiology in health and disease. CCB has developed a computational framework built around the Manifold Atlas, an integrated biomedical computing environment that enables statistical inference on biological manifolds. These manifolds model biological structures, features, shapes, and flows, and support sophisticated morphometric and statistical analyses. The Manifold Atlas includes tools, workflows, and services for multimodal population-based modeling and analysis of biological manifolds. The broad spectrum of biomedical topics explored by CCB investigators include the study of normal and pathological brain development, maturation and aging, discovery of associations between neuroimaging and genetic biomarkers, and the modeling, analysis, and visualization of biological shape, form, and size. CCB supports a wide range of short-term and long-term collaborations with outside investigators, which drive the center's computational developments and focus the validation and dissemination of CCB resources to new areas and scientific domains.

Entities:  

Mesh:

Year:  2011        PMID: 22081221      PMCID: PMC3277626          DOI: 10.1136/amiajnl-2011-000525

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  33 in total

1.  Creation and use of a Talairach-compatible atlas for accurate, automated, nonlinear intersubject registration, and analysis of functional imaging data.

Authors:  R P Woods; M Dapretto; N L Sicotte; A W Toga; J C Mazziotta
Journal:  Hum Brain Mapp       Date:  1999       Impact factor: 5.038

Review 2.  Advances in functional and structural MR image analysis and implementation as FSL.

Authors:  Stephen M Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola De Stefano; J Michael Brady; Paul M Matthews
Journal:  Neuroimage       Date:  2004       Impact factor: 6.556

3.  Construction of a 3D probabilistic atlas of human cortical structures.

Authors:  David W Shattuck; Mubeena Mirza; Vitria Adisetiyo; Cornelius Hojatkashani; Georges Salamon; Katherine L Narr; Russell A Poldrack; Robert M Bilder; Arthur W Toga
Journal:  Neuroimage       Date:  2007-11-26       Impact factor: 6.556

4.  Conformal slit mapping and its applications to brain surface parameterization.

Authors:  Yalin Wang; Xianfeng Gu; Tony F Chan; Paul M Thompson; Shing-Tung Yau
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

Review 5.  Cognitive ontologies for neuropsychiatric phenomics research.

Authors:  Robert M Bilder; Fred W Sabb; D Stott Parker; Donald Kalar; Wesley W Chu; Jared Fox; Nelson B Freimer; Russell A Poldrack
Journal:  Cogn Neuropsychiatry       Date:  2009       Impact factor: 1.871

6.  Association of DISC1/TRAX haplotypes with schizophrenia, reduced prefrontal gray matter, and impaired short- and long-term memory.

Authors:  Tyrone D Cannon; William Hennah; Theo G M van Erp; Paul M Thompson; Jouko Lonnqvist; Matti Huttunen; Timothy Gasperoni; Annamari Tuulio-Henriksson; Tia Pirkola; Arthur W Toga; Jaakko Kaprio; John Mazziotta; Leena Peltonen
Journal:  Arch Gen Psychiatry       Date:  2005-11

7.  Time-lapse mapping of cortical changes in schizophrenia with different treatments.

Authors:  Paul M Thompson; George Bartzokis; Kiralee M Hayashi; Andrea D Klunder; Po H Lu; Nancy Edwards; Michael S Hong; Michael Yu; Jennifer A Geaga; Arthur W Toga; Cecil Charles; Diana O Perkins; Joseph McEvoy; Robert M Hamer; Mauricio Tohen; Gary D Tollefson; Jeffrey A Lieberman
Journal:  Cereb Cortex       Date:  2008-10-08       Impact factor: 5.357

8.  Neuroimaging study designs, computational analyses and data provenance using the LONI pipeline.

Authors:  Ivo Dinov; Kamen Lozev; Petros Petrosyan; Zhizhong Liu; Paul Eggert; Jonathan Pierce; Alen Zamanyan; Shruthi Chakrapani; John Van Horn; D Stott Parker; Rico Magsipoc; Kelvin Leung; Boris Gutman; Roger Woods; Arthur Toga
Journal:  PLoS One       Date:  2010-09-28       Impact factor: 3.240

9.  Efficient, Distributed and Interactive Neuroimaging Data Analysis Using the LONI Pipeline.

Authors:  Ivo D Dinov; John D Van Horn; Kamen M Lozev; Rico Magsipoc; Petros Petrosyan; Zhizhong Liu; Allan Mackenzie-Graham; Paul Eggert; Douglas S Parker; Arthur W Toga
Journal:  Front Neuroinform       Date:  2009-07-20       Impact factor: 4.081

10.  iTools: a framework for classification, categorization and integration of computational biology resources.

Authors:  Ivo D Dinov; Daniel Rubin; William Lorensen; Jonathan Dugan; Jeff Ma; Shawn Murphy; Beth Kirschner; William Bug; Michael Sherman; Aris Floratos; David Kennedy; H V Jagadish; Jeanette Schmidt; Brian Athey; Andrea Califano; Mark Musen; Russ Altman; Ron Kikinis; Isaac Kohane; Scott Delp; D Stott Parker; Arthur W Toga
Journal:  PLoS One       Date:  2008-05-28       Impact factor: 3.240

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  5 in total

1.  National Centers for Biomedical Computing: from the BISTI report to the future.

Authors:  Jeremy M Berg
Journal:  J Am Med Inform Assoc       Date:  2012-01-18       Impact factor: 4.497

2.  Disseminating informatics knowledge and training the next generation of leaders.

Authors:  Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2014 Nov-Dec       Impact factor: 4.497

3.  Gene Expression Data to Mouse Atlas Registration Using a Nonlinear Elasticity Smoother and Landmark Points Constraints.

Authors:  Tungyou Lin; Carole Le Guyader; Ivo Dinov; Paul Thompson; Arthur Toga; Luminita Vese
Journal:  J Sci Comput       Date:  2012-03       Impact factor: 2.592

4.  The perfect neuroimaging-genetics-computation storm: collision of petabytes of data, millions of hardware devices and thousands of software tools.

Authors:  Ivo D Dinov; Petros Petrosyan; Zhizhong Liu; Paul Eggert; Alen Zamanyan; Federica Torri; Fabio Macciardi; Sam Hobel; Seok Woo Moon; Young Hee Sung; Zhiguo Jiang; Jennifer Labus; Florian Kurth; Cody Ashe-McNalley; Emeran Mayer; Paul M Vespa; John D Van Horn; Arthur W Toga
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

5.  Recent trends in biomedical informatics: a study based on JAMIA articles.

Authors:  Xiaoqian Jiang; Krystal Tse; Shuang Wang; Son Doan; Hyeoneui Kim; Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2013-11-08       Impact factor: 4.497

  5 in total

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