Literature DB >> 19206510

Ion pairing in molecular simulations of aqueous alkali halide solutions.

Christopher J Fennell1, Alan Bizjak, Vojko Vlachy, Ken A Dill.   

Abstract

Using classical molecular dynamics simulations, we study ion-ion interactions in water. We study the potentials of mean force (PMF) for the full set of alkali halide ion pairs, and in each case, we test different parameter sets for modeling both the water and the ions. Altogether, we compared 300 different PMFs. We also calculate association equilibrium constants (KA) and compare them to two types of experiments. Of additional interest here was the proposition of Collins called the "law of matching water affinities", where the relative affinity of ions in solution depends on the matching of cation and anion sizes. From observations on the relative depths of the free energies of the contact ion pair (CIP) and the solvent-shared ion pair (SIP), along with related solvent structure analyses, we find a good correlation with this proposition: small-small and large-large should associate in water, and small-large should be more dissociated.

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Year:  2009        PMID: 19206510      PMCID: PMC2698044          DOI: 10.1021/jp809782z

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  38 in total

1.  How ions affect the structure of water.

Authors:  Barbara Hribar; Noel T Southall; Vojko Vlachy; Ken A Dill
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2.  Ion solvation thermodynamics from simulation with a polarizable force field.

Authors:  Alan Grossfield; Pengyu Ren; Jay W Ponder
Journal:  J Am Chem Soc       Date:  2003-12-17       Impact factor: 15.419

3.  Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew.

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Journal:  J Chem Phys       Date:  2004-05-22       Impact factor: 3.488

4.  Size dependent ion hydration, its asymmetry, and convergence to macroscopic behavior.

Authors:  Sowmianarayanan Rajamani; Tuhin Ghosh; Shekhar Garde
Journal:  J Chem Phys       Date:  2004-03-01       Impact factor: 3.488

5.  A reoptimization of the five-site water potential (TIP5P) for use with Ewald sums.

Authors:  Steven W Rick
Journal:  J Chem Phys       Date:  2004-04-01       Impact factor: 3.488

6.  Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: diffusion, free energy of hydration, and structural properties.

Authors:  Michael Patra; Mikko Karttunen
Journal:  J Comput Chem       Date:  2004-04-15       Impact factor: 3.376

Review 7.  Ion hydration: Implications for cellular function, polyelectrolytes, and protein crystallization.

Authors:  Kim D Collins
Journal:  Biophys Chem       Date:  2005-10-05       Impact factor: 2.352

8.  Surfaces affect ion pairing.

Authors:  Ilya Chorny; Ken A Dill; Matthew P Jacobson
Journal:  J Phys Chem B       Date:  2005-12-22       Impact factor: 2.991

Review 9.  Modeling water, the hydrophobic effect, and ion solvation.

Authors:  Ken A Dill; Thomas M Truskett; Vojko Vlachy; Barbara Hribar-Lee
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

10.  Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process.

Authors:  Kim D Collins
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

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  28 in total

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2.  Structural and technical details of the Kirkwood-Buff integrals from the optimization of ionic force fields: focus on fluorides.

Authors:  M Fyta
Journal:  Eur Phys J E Soft Matter       Date:  2012-03-22       Impact factor: 1.890

3.  Cation specific binding with protein surface charges.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-28       Impact factor: 11.205

4.  Explicit-water theory for the salt-specific effects and Hofmeister series in protein solutions.

Authors:  Yuriy V Kalyuzhnyi; Vojko Vlachy
Journal:  J Chem Phys       Date:  2016-06-07       Impact factor: 3.488

5.  Ion disturbance and clustering in the NaCl water solutions.

Authors:  Qiang Zhang; Xia Zhang; Dong-Xia Zhao
Journal:  J Mol Model       Date:  2012-09-23       Impact factor: 1.810

6.  Theoretical study on ion-pair recognition of M(+)X(-) (M = Li, Na, K and X = F, Cl, Br) by formylaminocalix[4]arene derivatives.

Authors:  Ju Xie; Guolian Jin; Long Sun; Wenling Feng; Pengfei Lu; Guowang Diao
Journal:  J Mol Model       Date:  2012-06-26       Impact factor: 1.810

7.  Effects of the translational and rotational degrees of freedom on the hydration of simple solutes.

Authors:  Tomaž Mohorič; Barbara Hribar-Lee; Vojko Vlachy
Journal:  J Chem Phys       Date:  2014-05-14       Impact factor: 3.488

8.  An Investigation of Ion-Pairing of Alkali Metal Halides in Aqueous Solutions Using the Electrical Conductivity and the Monte Carlo Computer Simulation Methods.

Authors:  Jure Gujt; Marija Bešter-Rogač; Barbara Hribar-Lee
Journal:  J Mol Liq       Date:  2014-02       Impact factor: 6.165

Review 9.  New tricks for old dogs: improving the accuracy of biomolecular force fields by pair-specific corrections to non-bonded interactions.

Authors:  Jejoong Yoo; Aleksei Aksimentiev
Journal:  Phys Chem Chem Phys       Date:  2018-03-28       Impact factor: 3.676

10.  Water in cavity-ligand recognition.

Authors:  Riccardo Baron; Piotr Setny; J Andrew McCammon
Journal:  J Am Chem Soc       Date:  2010-09-01       Impact factor: 15.419

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