Literature DB >> 24832291

Effects of the translational and rotational degrees of freedom on the hydration of simple solutes.

Tomaž Mohorič1, Barbara Hribar-Lee1, Vojko Vlachy1.   

Abstract

Molecular dynamics simulations with separate thermostats for rotational and translational motion were used to study the effect of these degrees of freedom on the structure of water around model solutes. To describe water molecules we used the SPC/E model. The simplest solute studied here, the hydrophobe, was represented as a Lennard-Jones particle. Since direct interaction between the hydrophobe and water molecules has no angular dependence the influence of the increase of the rotational temperature on the solvation of a hydrophobe is only indirect. In the next step the central solute was assumed to be charged with either a positive or a negative charge to mimic an ion in water. Hence, depending on the charge of the ion, the neighboring water molecules assumed different angular distributions. The principal conclusions of this work are: (i) an increase of the translational temperature always decreases the height of the first peak in the solute-water radial distribution function; (ii) an increase of the rotational temperature yields an increase in the first peak in the solute-water radial distribution function for hydrophobes and cations; (iii) in contrast to this, the solvation peak decreases around ions with sufficiently large negative charge; and (iv) an increase of the rotational temperature affects cations in an opposite way to anions. For this reason complex molecules with a small net charge may not be very sensitive to variation of the rotational temperature.

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Year:  2014        PMID: 24832291      PMCID: PMC4032416          DOI: 10.1063/1.4875280

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  24 in total

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2.  Reorientation and allied dynamics in water and aqueous solutions.

Authors:  Damien Laage; Guillaume Stirnemann; Fabio Sterpone; Rossend Rey; James T Hynes
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Authors:  Motohiko Tanaka; Motoyasu Sato
Journal:  J Chem Phys       Date:  2007-01-21       Impact factor: 3.488

4.  Ion pairing.

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5.  Microwave catalysis through rotationally hot reactive species.

Authors:  Urban Bren; Andrej Krzan; Janez Mavri
Journal:  J Phys Chem A       Date:  2007-12-22       Impact factor: 2.781

6.  Hydration free energies of cyanide and hydroxide ions from molecular dynamics simulations with accurate force fields.

Authors:  Myung Won Lee; Markus Meuwly
Journal:  Phys Chem Chem Phys       Date:  2013-12-14       Impact factor: 3.676

7.  Effective solvent mediated potentials of Na+ and Cl- ions in aqueous solution: temperature dependence.

Authors:  Alexander Mirzoev; Alexander P Lyubartsev
Journal:  Phys Chem Chem Phys       Date:  2011-02-11       Impact factor: 3.676

8.  Ion solvation in water from molecular dynamics simulation with the ABEEM/MM force field.

Authors:  Zhong-Zhi Yang; Xin Li
Journal:  J Phys Chem A       Date:  2005-04-28       Impact factor: 2.781

9.  Ion pairing in aqueous electrolyte solutions with biologically relevant anions.

Authors:  Pritam Ganguly; Pim Schravendijk; Berk Hess; Nico F A van der Vegt
Journal:  J Phys Chem B       Date:  2011-03-16       Impact factor: 2.991

10.  Charge density-dependent strength of hydration and biological structure.

Authors:  K D Collins
Journal:  Biophys J       Date:  1997-01       Impact factor: 4.033

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  1 in total

1.  Could Microwave Irradiation Cause Misfolding of Peptides?

Authors:  Martin Gladovic; Chris Oostenbrink; Urban Bren
Journal:  J Chem Theory Comput       Date:  2020-03-20       Impact factor: 6.006

  1 in total

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