Literature DB >> 15267980

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew.

Hans W Horn1, William C Swope, Jed W Pitera, Jeffry D Madura, Thomas J Dick, Greg L Hura, Teresa Head-Gordon.   

Abstract

A re-parameterization of the standard TIP4P water model for use with Ewald techniques is introduced, providing an overall global improvement in water properties relative to several popular nonpolarizable and polarizable water potentials. Using high precision simulations, and careful application of standard analytical corrections, we show that the new TIP4P-Ew potential has a density maximum at approximately 1 degrees C, and reproduces experimental bulk-densities and the enthalpy of vaporization, DeltaH(vap), from -37.5 to 127 degrees C at 1 atm with an absolute average error of less than 1%. Structural properties are in very good agreement with x-ray scattering intensities at temperatures between 0 and 77 degrees C and dynamical properties such as self-diffusion coefficient are in excellent agreement with experiment. The parameterization approach used can be easily generalized to rehabilitate any water force field using available experimental data over a range of thermodynamic points. (c) 2004 American Institute of Physics.

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Year:  2004        PMID: 15267980     DOI: 10.1063/1.1683075

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  361 in total

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Journal:  J Comput Chem       Date:  2010-10-05       Impact factor: 3.376

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

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Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

4.  Small-angle scattering and the structure of ambient liquid water.

Authors:  Gary N I Clark; Greg L Hura; Jose Teixeira; Alan K Soper; Teresa Head-Gordon
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-20       Impact factor: 11.205

5.  Predicting hydration free energies using all-atom molecular dynamics simulations and multiple starting conformations.

Authors:  Pavel V Klimovich; David L Mobley
Journal:  J Comput Aided Mol Des       Date:  2010-04-06       Impact factor: 3.686

6.  Soft-core potentials in thermodynamic integration: comparing one- and two-step transformations.

Authors:  Thomas Steinbrecher; InSuk Joung; David A Case
Journal:  J Comput Chem       Date:  2011-08-27       Impact factor: 3.376

7.  Solvation of Glucose, Trehalose, and Sucrose by the Soft Sticky Dipole-Quadrupole-Octupole Water Model.

Authors:  Jerez A Te; Ming-Liang Tan; Toshiko Ichiye
Journal:  Chem Phys Lett       Date:  2010-05-17       Impact factor: 2.328

8.  UNDERSTANDING STRUCTURAL EFFECTS OF MULTIPOLE MOMENTS ON AQUEOUS SOLVATION OF IONS USING THE SOFT-STICKY DIPOLE-QUADRUPOLE-OCTUPOLE WATER MODEL.

Authors:  Jerez A Te; Toshiko Ichiye
Journal:  Chem Phys Lett       Date:  2010-10-29       Impact factor: 2.328

9.  Enhancing Virtual Screening Performance of Protein Kinases with Molecular Dynamics Simulations.

Authors:  Tavina L Offutt; Robert V Swift; Rommie E Amaro
Journal:  J Chem Inf Model       Date:  2016-10-03       Impact factor: 4.956

10.  Reparameterization of Solute-Solute Interactions for Amino Acid-Sugar Systems Using Isopiestic Osmotic Pressure Molecular Dynamics Simulations.

Authors:  Wesley K Lay; Mark S Miller; Adrian H Elcock
Journal:  J Chem Theory Comput       Date:  2017-04-28       Impact factor: 6.006

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