Literature DB >> 19199428

Designer DNA nanoarchitectures.

Chenxiang Lin1, Yan Liu, Hao Yan.   

Abstract

Naturally existing biological systems, from the simplest unicellular diatom to the most sophisticated organ such as the human brain, are functional self-assembled architectures. Scientists have long been dreaming about building artificial nanostructures that can mimic such elegance in nature. Structural DNA nanotechnology, which uses DNA as a blueprint and building material to organize matter with nanometer precision, represents an appealing solution to this challenge. On the basis of the knowledge of helical DNA structure and Watson-Crick base pairing rules, scientists have constructed a number of DNA nanoarchitectures with a large variety of geometries, topologies, and periodicities with considerably high yields. Modified by functional groups, those DNA nanostructures can serve as scaffolds to control the positioning of other molecular species, which opens opportunities to study intermolecular synergies, such as protein-protein interactions, as well as to build artificial multicomponent nanomachines. In this review, we summarize the principle of DNA self-assembly, describe the exciting progress of structural DNA nanotechnology in recent years, and discuss the current frontier.

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Year:  2009        PMID: 19199428      PMCID: PMC2765550          DOI: 10.1021/bi802324w

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  72 in total

1.  DNA nanotechnology: Chemical copying of connectivity.

Authors:  Lars Henning Eckardt; Kai Naumann; Wolf Matthias Pankau; Michael Rein; Markus Schweitzer; Norbert Windhab; Günter von Kiedrowski
Journal:  Nature       Date:  2002-11-21       Impact factor: 49.962

2.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

3.  Two computational primitives for algorithmic self-assembly: copying and counting.

Authors:  Robert D Barish; Paul W K Rothemund; Erik Winfree
Journal:  Nano Lett       Date:  2005-12       Impact factor: 11.189

4.  Finite-size, fully addressable DNA tile lattices formed by hierarchical assembly procedures.

Authors:  Sung Ha Park; Constantin Pistol; Sang Jung Ahn; John H Reif; Alvin R Lebeck; Chris Dwyer; Thomas H LaBean
Journal:  Angew Chem Int Ed Engl       Date:  2006-01-23       Impact factor: 15.336

5.  Rolling-circle amplification of a DNA nanojunction.

Authors:  Chenxiang Lin; Mingyi Xie; Julian J L Chen; Yan Liu; Hao Yan
Journal:  Angew Chem Int Ed Engl       Date:  2006-11-20       Impact factor: 15.336

Review 6.  Peptide self-assembly at the nanoscale: a challenging target for computational and experimental biotechnology.

Authors:  Giorgio Colombo; Patricia Soto; Ehud Gazit
Journal:  Trends Biotechnol       Date:  2007-03-26       Impact factor: 19.536

7.  Conformational flexibility facilitates self-assembly of complex DNA nanostructures.

Authors:  Chuan Zhang; Min Su; Yu He; Xin Zhao; Ping-an Fang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-30       Impact factor: 11.205

Review 8.  DNA nanomachines.

Authors:  Jonathan Bath; Andrew J Turberfield
Journal:  Nat Nanotechnol       Date:  2007-05       Impact factor: 39.213

Review 9.  Construction of three-dimensional stick figures from branched DNA.

Authors:  N C Seeman
Journal:  DNA Cell Biol       Date:  1991-09       Impact factor: 3.311

Review 10.  Applications of dip-pen nanolithography.

Authors:  Khalid Salaita; Yuhuang Wang; Chad A Mirkin
Journal:  Nat Nanotechnol       Date:  2007-02-25       Impact factor: 39.213

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  47 in total

1.  A structurally tunable DNA-based extracellular matrix.

Authors:  Faisal A Aldaye; William T Senapedis; Pamela A Silver; Jeffrey C Way
Journal:  J Am Chem Soc       Date:  2010-10-27       Impact factor: 15.419

2.  Interconnecting gold islands with DNA origami nanotubes.

Authors:  Baoquan Ding; Hao Wu; Wei Xu; Zhao Zhao; Yan Liu; Hongbin Yu; Hao Yan
Journal:  Nano Lett       Date:  2010-11-11       Impact factor: 11.189

Review 3.  Spatially-interactive biomolecular networks organized by nucleic acid nanostructures.

Authors:  Jinglin Fu; Minghui Liu; Yan Liu; Hao Yan
Journal:  Acc Chem Res       Date:  2012-05-29       Impact factor: 22.384

4.  Folding and cutting DNA into reconfigurable topological nanostructures.

Authors:  Dongran Han; Suchetan Pal; Yan Liu; Hao Yan
Journal:  Nat Nanotechnol       Date:  2010-10-03       Impact factor: 39.213

5.  RNA nanotechnology for computer design and in vivo computation.

Authors:  Meikang Qiu; Emil Khisamutdinov; Zhengyi Zhao; Cheryl Pan; Jeong-Woo Choi; Neocles B Leontis; Peixuan Guo
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2013-09-02       Impact factor: 4.226

6.  Site-specific positioning of dendritic alkyl chains on DNA cages enables their geometry-dependent self-assembly.

Authors:  Thomas G W Edwardson; Karina M M Carneiro; Christopher K McLaughlin; Christopher J Serpell; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2013-09-01       Impact factor: 24.427

Review 7.  Materiomics: biological protein materials, from nano to macro.

Authors:  Steven Cranford; Markus J Buehler
Journal:  Nanotechnol Sci Appl       Date:  2010-11-12

8.  Self-assembly: Coordinating corners.

Authors:  Yan Liu; Hao Yan
Journal:  Nat Chem       Date:  2009-08       Impact factor: 24.427

9.  Programmable periodicity of quantum dot arrays with DNA origami nanotubes.

Authors:  Hieu Bui; Craig Onodera; Carson Kidwell; YerPeng Tan; Elton Graugnard; Wan Kuang; Jeunghoon Lee; William B Knowlton; Bernard Yurke; William L Hughes
Journal:  Nano Lett       Date:  2010-09-08       Impact factor: 11.189

10.  In vitro assembly of cubic RNA-based scaffolds designed in silico.

Authors:  Kirill A Afonin; Eckart Bindewald; Alan J Yaghoubian; Neil Voss; Erica Jacovetty; Bruce A Shapiro; Luc Jaeger
Journal:  Nat Nanotechnol       Date:  2010-08-29       Impact factor: 39.213

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