Literature DB >> 18667705

Conformational flexibility facilitates self-assembly of complex DNA nanostructures.

Chuan Zhang1, Min Su, Yu He, Xin Zhao, Ping-an Fang, Alexander E Ribbe, Wen Jiang, Chengde Mao.   

Abstract

Molecular self-assembly is a promising approach to the preparation of nanostructures. DNA, in particular, shows great potential to be a superb molecular system. Synthetic DNA molecules have been programmed to assemble into a wide range of nanostructures. It is generally believed that rigidities of DNA nanomotifs (tiles) are essential for programmable self-assembly of well defined nanostructures. Recently, we have shown that adequate conformational flexibility could be exploited for assembling 3D objects, including tetrahedra, dodecahedra, and buckyballs, out of DNA three-point star motifs. In the current study, we have integrated tensegrity principle into this concept to assemble well defined, complex nanostructures in both 2D and 3D. A symmetric five-point-star motif (tile) has been designed to assemble into icosahedra or large nanocages depending on the concentration and flexibility of the DNA tiles. In both cases, the DNA tiles exhibit significant flexibilities and undergo substantial conformational changes, either symmetrically bending out of the plane or asymmetrically bending in the plane. In contrast to the complicated natures of the assembled structures, the approach presented here is simple and only requires three different component DNA strands. These results demonstrate that conformational flexibility could be explored to generate complex DNA nanostructures. The basic concept might be further extended to other biomacromolecular systems, such as RNA and proteins.

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Year:  2008        PMID: 18667705      PMCID: PMC2504817          DOI: 10.1073/pnas.0803841105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Tensegrity: construction of rigid DNA triangles with flexible four-arm DNA junctions.

Authors:  Dage Liu; Mingsheng Wang; Zhaoxiang Deng; Richard Walulu; Chengde Mao
Journal:  J Am Chem Soc       Date:  2004-03-03       Impact factor: 15.419

3.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

4.  Self-assembly of hexagonal DNA two-dimensional (2D) arrays.

Authors:  Yu He; Yi Chen; Haipeng Liu; Alexander E Ribbe; Chengde Mao
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

5.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

6.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

7.  Balancing flexibility and stress in DNA nanostructures.

Authors:  Yu He; Chengde Mao
Journal:  Chem Commun (Camb)       Date:  2006-01-20       Impact factor: 6.222

8.  A virus-based single-enzyme nanoreactor.

Authors:  Marta Comellas-Aragonès; Hans Engelkamp; Victor I Claessen; Nico A J M Sommerdijk; Alan E Rowan; Peter C M Christianen; Jan C Maan; Benedictus J M Verduin; Jeroen J L M Cornelissen; Roeland J M Nolte
Journal:  Nat Nanotechnol       Date:  2007-09-23       Impact factor: 39.213

9.  Self-assembly of a DNA dodecahedron from 20 trisoligonucleotides with C(3h) linkers.

Authors:  Jan Zimmermann; Martin P J Cebulla; Sven Mönninghoff; Günter von Kiedrowski
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

10.  Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Authors:  Yu He; Tao Ye; Min Su; Chuan Zhang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

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  31 in total

Review 1.  Bioapplications of DNA nanotechnology at the solid-liquid interface.

Authors:  Wenjing Wang; Sha Yu; Shan Huang; Sai Bi; Heyou Han; Jian-Rong Zhang; Yi Lu; Jun-Jie Zhu
Journal:  Chem Soc Rev       Date:  2019-09-16       Impact factor: 54.564

2.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

3.  Bio-inspired supramolecular self-assembly towards soft nanomaterials.

Authors:  Yiyang Lin; Chuanbin Mao
Journal:  Front Mater Sci       Date:  2011-09-01       Impact factor: 2.765

Review 4.  Dynamic DNA Structures.

Authors:  Yingwei Zhang; Victor Pan; Xue Li; Xueqin Yang; Haofei Li; Pengfei Wang; Yonggang Ke
Journal:  Small       Date:  2019-04-10       Impact factor: 13.281

5.  DeNAno: Selectable deoxyribonucleic acid nanoparticle libraries.

Authors:  Jason M Steiner; Marta Sartor; Ana B Sanchez; Davorka Messmer; Anna Freed; Sadik Esener; Bradley T Messmer
Journal:  J Biotechnol       Date:  2009-12-04       Impact factor: 3.307

6.  Self-assembly of three-dimensional prestressed tensegrity structures from DNA.

Authors:  Tim Liedl; Björn Högberg; Jessica Tytell; Donald E Ingber; William M Shih
Journal:  Nat Nanotechnol       Date:  2010-06-20       Impact factor: 39.213

Review 7.  Construction of bacteriophage phi29 DNA packaging motor and its applications in nanotechnology and therapy.

Authors:  Tae Jin Lee; Chad Schwartz; Peixuan Guo
Journal:  Ann Biomed Eng       Date:  2009-06-04       Impact factor: 3.934

8.  A DNA nanostructure platform for directed assembly of synthetic vaccines.

Authors:  Xiaowei Liu; Yang Xu; Tao Yu; Craig Clifford; Yan Liu; Hao Yan; Yung Chang
Journal:  Nano Lett       Date:  2012-07-06       Impact factor: 11.189

9.  Fabrication of massive sheets of single layer patterned arrays using lipid directed reengineered phi29 motor dodecamer.

Authors:  Feng Xiao; Jinchuan Sun; Oana Coban; Peter Schoen; Joseph Che-Yen Wang; R Holland Cheng; Peixuan Guo
Journal:  ACS Nano       Date:  2009-01-27       Impact factor: 15.881

10.  Self-assembly of DNA into nanoscale three-dimensional shapes.

Authors:  Shawn M Douglas; Hendrik Dietz; Tim Liedl; Björn Högberg; Franziska Graf; William M Shih
Journal:  Nature       Date:  2009-05-21       Impact factor: 49.962

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