Literature DB >> 20890274

Folding and cutting DNA into reconfigurable topological nanostructures.

Dongran Han1, Suchetan Pal, Yan Liu, Hao Yan.   

Abstract

Topology is the mathematical study of the spatial properties that are preserved through the deformation, twisting and stretching of objects. Topological architectures are common in nature and can be seen, for example, in DNA molecules that condense and relax during cellular events. Synthetic topological nanostructures, such as catenanes and rotaxanes, have been engineered using supramolecular chemistry, but the fabrication of complex and reconfigurable structures remains challenging. Here, we show that DNA origami can be used to assemble a Möbius strip, a topological ribbon-like structure that has only one side. In addition, we show that the DNA Möbius strip can be reconfigured through strand displacement to create topological objects such as supercoiled ring and catenane structures. This DNA fold-and-cut strategy, analogous to Japanese kirigami, may be used to create and reconfigure programmable topological structures that are unprecedented in molecular engineering.

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Year:  2010        PMID: 20890274      PMCID: PMC3071358          DOI: 10.1038/nnano.2010.193

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  28 in total

1.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

2.  Gold nanoparticle self-similar chain structure organized by DNA origami.

Authors:  Baoquan Ding; Zhengtao Deng; Hao Yan; Stefano Cabrini; Ronald N Zuckermann; Jeffrey Bokor
Journal:  J Am Chem Soc       Date:  2010-03-17       Impact factor: 15.419

3.  Rapid chiral assembly of rigid DNA building blocks for molecular nanofabrication.

Authors:  R P Goodman; I A T Schaap; C F Tardin; C M Erben; R M Berry; C F Schmidt; A J Turberfield
Journal:  Science       Date:  2005-12-09       Impact factor: 47.728

4.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

5.  The shape of a Möbius strip.

Authors:  E L Starostin; G H M van der Heijden
Journal:  Nat Mater       Date:  2007-07-15       Impact factor: 43.841

6.  Control of self-assembly of DNA tubules through integration of gold nanoparticles.

Authors:  Jaswinder Sharma; Rahul Chhabra; Anchi Cheng; Jonathan Brownell; Yan Liu; Hao Yan
Journal:  Science       Date:  2009-01-02       Impact factor: 47.728

7.  Design and self-assembly of two-dimensional DNA crystals.

Authors:  E Winfree; F Liu; L A Wenzler; N C Seeman
Journal:  Nature       Date:  1998-08-06       Impact factor: 49.962

Review 8.  Möbius aromaticity and antiaromaticity in expanded porphyrins.

Authors:  Zin Seok Yoon; Atsuhiro Osuka; Dongho Kim
Journal:  Nat Chem       Date:  2009-05       Impact factor: 24.427

9.  Knotting and threading of molecules: chemistry and chirality of molecular knots and their assemblies.

Authors:  Oleg Lukin; Fritz Vögtle
Journal:  Angew Chem Int Ed Engl       Date:  2005-02-25       Impact factor: 15.336

10.  Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Authors:  Yu He; Tao Ye; Min Su; Chuan Zhang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

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  51 in total

Review 1.  Artificial Molecular Machines.

Authors:  Sundus Erbas-Cakmak; David A Leigh; Charlie T McTernan; Alina L Nussbaumer
Journal:  Chem Rev       Date:  2015-09-08       Impact factor: 60.622

2.  Light sensitization of DNA nanostructures via incorporation of photo-cleavable spacers.

Authors:  Richie E Kohman; Xue Han
Journal:  Chem Commun (Camb)       Date:  2015-04-04       Impact factor: 6.222

3.  Scaling down DNA circuits with competitive neural networks.

Authors:  Anthony J Genot; Teruo Fujii; Yannick Rondelez
Journal:  J R Soc Interface       Date:  2013-06-12       Impact factor: 4.118

4.  RNA nanotechnology for computer design and in vivo computation.

Authors:  Meikang Qiu; Emil Khisamutdinov; Zhengyi Zhao; Cheryl Pan; Jeong-Woo Choi; Neocles B Leontis; Peixuan Guo
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2013-09-02       Impact factor: 4.226

5.  A primer to scaffolded DNA origami.

Authors:  Carlos Ernesto Castro; Fabian Kilchherr; Do-Nyun Kim; Enrique Lin Shiao; Tobias Wauer; Philipp Wortmann; Mark Bathe; Hendrik Dietz
Journal:  Nat Methods       Date:  2011-03       Impact factor: 28.547

6.  Helicity conservation by flow across scales in reconnecting vortex links and knots.

Authors:  Martin W Scheeler; Dustin Kleckner; Davide Proment; Gordon L Kindlmann; William T M Irvine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-17       Impact factor: 11.205

7.  Programmable motion of DNA origami mechanisms.

Authors:  Alexander E Marras; Lifeng Zhou; Hai-Jun Su; Carlos E Castro
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-05       Impact factor: 11.205

8.  Knot theory realizations in nematic colloids.

Authors:  Simon Čopar; Uroš Tkalec; Igor Muševič; Slobodan Žumer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-26       Impact factor: 11.205

9.  Design and Synthesis of a Reconfigurable DNA Accordion Rack.

Authors:  Yeongjae Choi; Hansol Choi; Amos C Lee; Sunghoon Kwon
Journal:  J Vis Exp       Date:  2018-08-15       Impact factor: 1.355

10.  Nucleic acid-based nanoengineering: novel structures for biomedical applications.

Authors:  Hanying Li; Thomas H Labean; Kam W Leong
Journal:  Interface Focus       Date:  2011-06-28       Impact factor: 3.906

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