Literature DB >> 19153261

The fixation probability of rare mutators in finite asexual populations.

C Scott Wylie1, Cheol-Min Ghim, David Kessler, Herbert Levine.   

Abstract

A mutator is an allele that increases the mutation rate throughout the genome by disrupting some aspect of DNA replication or repair. Mutators that increase the mutation rate by the order of 100-fold have been observed to spontaneously emerge and achieve high frequencies in natural populations and in long-term laboratory evolution experiments with Escherichia coli. In principle, the fixation of mutator alleles is limited by (i) competition with mutations in wild-type backgrounds, (ii) additional deleterious mutational load, and (iii) random genetic drift. Using a multiple-locus model and employing both simulation and analytic methods, we investigate the effects of these three factors on the fixation probability Pfix of an initially rare mutator as a function of population size N, beneficial and deleterious mutation rates, and the strength of mutations s. Our diffusion-based approximation for Pfix successfully captures effects ii and iii when selection is fast compared to mutation (micro/s<<1). This enables us to predict the conditions under which mutators will be evolutionarily favored. Surprisingly, our simulations show that effect i is typically small for strong-effect mutators. Our results agree semiquantitatively with existing laboratory evolution experiments and suggest future experimental directions.

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Year:  2009        PMID: 19153261      PMCID: PMC2666523          DOI: 10.1534/genetics.108.094532

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  41 in total

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Authors:  P D Keightley; A Eyre-Walker
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

2.  Mutation frequency and biological cost of antibiotic resistance in Helicobacter pylori.

Authors:  B Björkholm; M Sjölund; P G Falk; O G Berg; L Engstrand; D I Andersson
Journal:  Proc Natl Acad Sci U S A       Date:  2001-11-20       Impact factor: 11.205

3.  Mutator dynamics in fluctuating environments.

Authors:  J M J Travis; E R Travis
Journal:  Proc Biol Sci       Date:  2002-03-22       Impact factor: 5.349

4.  Mutator clones of Neisseria meningitidis in epidemic serogroup A disease.

Authors:  Anthony R Richardson; Zhong Yu; Tanja Popovic; Igor Stojiljkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-30       Impact factor: 11.205

5.  Mutator phenotype confers advantage in Escherichia coli chronic urinary tract infection pathogenesis.

Authors:  Francoise Labat; Olivier Pradillon; Louis Garry; Michel Peuchmaur; Bruno Fantin; Erick Denamur
Journal:  FEMS Immunol Med Microbiol       Date:  2005-06-01

6.  Escherichia coli mutators: selection criteria and migration effect.

Authors:  Ludovic Le Chat; Michel Fons; Francois Taddei
Journal:  Microbiology (Reading)       Date:  2006-01       Impact factor: 2.777

7.  An equivalence principle for the incorporation of favorable mutations in asexual populations.

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8.  The influence of hitchhiking and deleterious mutation upon asexual mutation rates.

Authors:  Michael E Palmer; Marc Lipsitch
Journal:  Genetics       Date:  2006-02-19       Impact factor: 4.562

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10.  The hitch-hiking effect of a favourable gene.

Authors:  J M Smith; J Haigh
Journal:  Genet Res       Date:  1974-02       Impact factor: 1.588

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  19 in total

1.  Kick-starting the ratchet: the fate of mutators in an asexual population.

Authors:  R Jonas Söderberg; Otto G Berg
Journal:  Genetics       Date:  2011-02-01       Impact factor: 4.562

2.  Complete numerical solution of the diffusion equation of random genetic drift.

Authors:  Lei Zhao; Xingye Yue; David Waxman
Journal:  Genetics       Date:  2013-06-07       Impact factor: 4.562

3.  The balance between mutators and nonmutators in asexual populations.

Authors:  Michael M Desai; Daniel S Fisher
Journal:  Genetics       Date:  2011-06-06       Impact factor: 4.562

Review 4.  Cancer in light of experimental evolution.

Authors:  Kathleen Sprouffske; Lauren M F Merlo; Philip J Gerrish; Carlo C Maley; Paul D Sniegowski
Journal:  Curr Biol       Date:  2012-09-11       Impact factor: 10.834

Review 5.  Experimental evolution and the dynamics of genomic mutation rate modifiers.

Authors:  Y Raynes; P D Sniegowski
Journal:  Heredity (Edinb)       Date:  2014-05-21       Impact factor: 3.821

6.  Evolution of Mutation Rates in Rapidly Adapting Asexual Populations.

Authors:  Benjamin H Good; Michael M Desai
Journal:  Genetics       Date:  2016-09-19       Impact factor: 4.562

7.  Variability in fitness effects can preclude selection of the fittest.

Authors:  Christopher J Graves; Daniel M Weinreich
Journal:  Annu Rev Ecol Evol Syst       Date:  2017-08-28       Impact factor: 13.915

8.  Contrasting dynamics of a mutator allele in asexual populations of differing size.

Authors:  Yevgeniy Raynes; Matthew R Gazzara; Paul D Sniegowski
Journal:  Evolution       Date:  2012-03-04       Impact factor: 3.694

9.  Interplay between pleiotropy and secondary selection determines rise and fall of mutators in stress response.

Authors:  Muyoung Heo; Eugene I Shakhnovich
Journal:  PLoS Comput Biol       Date:  2010-03-12       Impact factor: 4.475

10.  Evolution of clonal populations approaching a fitness peak.

Authors:  Isabel Gordo; Paulo R A Campos
Journal:  Biol Lett       Date:  2012-07-04       Impact factor: 3.703

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