Literature DB >> 16489233

The influence of hitchhiking and deleterious mutation upon asexual mutation rates.

Michael E Palmer1, Marc Lipsitch.   

Abstract

The question of how natural selection affects asexual mutation rates has been considered since the 1930s, yet our understanding continues to deepen. The distribution of mutation rates observed in natural bacteria remains unexplained. It is well known that environmental constancy can favor minimal mutation rates. In contrast, environmental fluctuation (e.g., at period T) can create indirect selective pressure for stronger mutators: genes modifying mutation rate may "hitchhike" to greater frequency along with environmentally favored mutations they produce. This article extends a well-known model of Leigh to consider fitness genes with multiple mutable sites (call the number of such sites alpha). The phenotypic effect of such a gene is enabled if all sites are in a certain state and disabled otherwise. The effects of multiple deleterious loci are also included (call the number of such loci gamma). The analysis calculates the indirect selective effects experienced by a gene inducing various mutation rates for given values of alpha, gamma, and T. Finite-population simulations validate these results and let us examine the interaction of drift with hitchhiking selection. We close by commenting on the importance of other factors, such as spatiotemporal variation, and on the origin of variation in mutation rates.

Mesh:

Year:  2006        PMID: 16489233      PMCID: PMC1461451          DOI: 10.1534/genetics.105.049445

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  29 in total

Review 1.  The evolution of mutation rates: separating causes from consequences.

Authors:  P D Sniegowski; P J Gerrish; T Johnson; A Shaver
Journal:  Bioessays       Date:  2000-12       Impact factor: 4.345

2.  Mutator dynamics in fluctuating environments.

Authors:  J M J Travis; E R Travis
Journal:  Proc Biol Sci       Date:  2002-03-22       Impact factor: 5.349

3.  Duration of colonization by methicillin-resistant Staphylococcus aureus after hospital discharge and risk factors for prolonged carriage.

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Journal:  Clin Infect Dis       Date:  2001-04-20       Impact factor: 9.079

4.  Mutators and sex in bacteria: conflict between adaptive strategies.

Authors:  O Tenaillon; H Le Nagard; B Godelle; F Taddei
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

5.  Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria.

Authors:  O Tenaillon; B Toupance; H Le Nagard; F Taddei; B Godelle
Journal:  Genetics       Date:  1999-06       Impact factor: 4.562

6.  Beneficial mutations, hitchhiking and the evolution of mutation rates in sexual populations.

Authors:  T Johnson
Journal:  Genetics       Date:  1999-04       Impact factor: 4.562

7.  The evolution of mutator genes in bacterial populations: the roles of environmental change and timing.

Authors:  Mark M Tanaka; Carl T Bergstrom; Bruce R Levin
Journal:  Genetics       Date:  2003-07       Impact factor: 4.562

8.  Observations on two types of genetic instability in Escherichia coli.

Authors:  K JYSSUM
Journal:  Acta Pathol Microbiol Scand       Date:  1960

9.  Mutators in space: the dynamics of high-mutability clones in a two-patch model.

Authors:  E R Travis; J M J Travis
Journal:  Genetics       Date:  2004-05       Impact factor: 4.562

10.  Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations.

Authors:  Richard E Lenski; Cynthia L Winkworth; Margaret A Riley
Journal:  J Mol Evol       Date:  2003-04       Impact factor: 2.395

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  9 in total

1.  Kick-starting the ratchet: the fate of mutators in an asexual population.

Authors:  R Jonas Söderberg; Otto G Berg
Journal:  Genetics       Date:  2011-02-01       Impact factor: 4.562

2.  The fixation probability of rare mutators in finite asexual populations.

Authors:  C Scott Wylie; Cheol-Min Ghim; David Kessler; Herbert Levine
Journal:  Genetics       Date:  2009-01-19       Impact factor: 4.562

3.  The cellular, developmental and population-genetic determinants of mutation-rate evolution.

Authors:  Michael Lynch
Journal:  Genetics       Date:  2008-08-30       Impact factor: 4.562

Review 4.  Origin and proliferation of multiple-drug resistance in bacterial pathogens.

Authors:  Hsiao-Han Chang; Ted Cohen; Yonatan H Grad; William P Hanage; Thomas F O'Brien; Marc Lipsitch
Journal:  Microbiol Mol Biol Rev       Date:  2015-03       Impact factor: 11.056

5.  Evolutionary origins of invasive populations.

Authors:  Carol Eunmi Lee; Gregory William Gelembiuk
Journal:  Evol Appl       Date:  2008-06-28       Impact factor: 5.183

6.  Survivability is more fundamental than evolvability.

Authors:  Michael E Palmer; Marcus W Feldman
Journal:  PLoS One       Date:  2012-06-18       Impact factor: 3.240

7.  The effect of bacterial mutation rate on the evolution of CRISPR-Cas adaptive immunity.

Authors:  Anne Chevallereau; Sean Meaden; Stineke van Houte; Edze R Westra; Clare Rollie
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-05-13       Impact factor: 6.237

8.  Mutation and Selection in Bacteria: Modelling and Calibration.

Authors:  C D Bayliss; C Fallaize; R Howitt; M V Tretyakov
Journal:  Bull Math Biol       Date:  2018-11-14       Impact factor: 1.758

9.  Broad conditions favor the evolution of phase-variable loci.

Authors:  M E Palmer; M Lipsitch; E R Moxon; C D Bayliss
Journal:  MBio       Date:  2013-01-08       Impact factor: 7.867

  9 in total

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