Literature DB >> 19141474

The A- and B-type nuclear lamin networks: microdomains involved in chromatin organization and transcription.

Takeshi Shimi1, Katrin Pfleghaar, Shin-ichiro Kojima, Chan-Gi Pack, Irina Solovei, Anne E Goldman, Stephen A Adam, Dale K Shumaker, Masataka Kinjo, Thomas Cremer, Robert D Goldman.   

Abstract

The nuclear lamins function in the regulation of replication, transcription, and epigenetic modifications of chromatin. However, the mechanisms responsible for these lamin functions are poorly understood. We demonstrate that A- and B-type lamins form separate, but interacting, stable meshworks in the lamina and have different mobilities in the nucleoplasm as determined by fluorescence correlation spectroscopy (FCS). Silencing lamin B1 (LB1) expression dramatically increases the lamina meshwork size and the mobility of nucleoplasmic lamin A (LA). The changes in lamina mesh size are coupled to the formation of LA/C-rich nuclear envelope blebs deficient in LB2. Comparative genomic hybridization (CGH) analyses of microdissected blebs, fluorescence in situ hybridization (FISH), and immunofluorescence localization of modified histones demonstrate that gene-rich euchromatin associates with the LA/C blebs. Enrichment of hyperphosphorylated RNA polymerase II (Pol II) and histone marks for active transcription suggest that blebs are transcriptionally active. However, in vivo labeling of RNA indicates that transcription is decreased, suggesting that the LA/C-rich microenvironment induces promoter proximal stalling of Pol II. We propose that different lamins are organized into separate, but interacting, microdomains and that LB1 is essential for their organization. Our evidence suggests that the organization and regulation of chromatin are influenced by interconnections between these lamin microdomains.

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Year:  2008        PMID: 19141474      PMCID: PMC2607069          DOI: 10.1101/gad.1735208

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  57 in total

Review 1.  The laminopathies: the functional architecture of the nucleus and its contribution to disease.

Authors:  Brian Burke; Colin L Stewart
Journal:  Annu Rev Genomics Hum Genet       Date:  2006       Impact factor: 8.929

Review 2.  Dynamics and interplay of nuclear architecture, genome organization, and gene expression.

Authors:  Robert Schneider; Rudolf Grosschedl
Journal:  Genes Dev       Date:  2007-12-01       Impact factor: 11.361

Review 3.  The complex language of chromatin regulation during transcription.

Authors:  Shelley L Berger
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

Review 4.  Facultative heterochromatin: is there a distinctive molecular signature?

Authors:  Patrick Trojer; Danny Reinberg
Journal:  Mol Cell       Date:  2007-10-12       Impact factor: 17.970

5.  Splicing promotes rapid and efficient mRNA export in mammalian cells.

Authors:  Patricia Valencia; Anusha P Dias; Robin Reed
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-20       Impact factor: 11.205

6.  Defective prelamin A processing and muscular and adipocyte alterations in Zmpste24 metalloproteinase-deficient mice.

Authors:  Alberto M Pendás; Zhongjun Zhou; Juan Cadiñanos; José M P Freije; Jianming Wang; Kjell Hultenby; Aurora Astudillo; Annika Wernerson; Francisco Rodríguez; Karl Tryggvason; Carlos López-Otín
Journal:  Nat Genet       Date:  2002-04-01       Impact factor: 38.330

7.  Single-cell isolation from cell suspensions and whole genome amplification from single cells to provide templates for CGH analysis.

Authors:  Jochen B Geigl; Michael R Speicher
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

8.  Alterations in mitosis and cell cycle progression caused by a mutant lamin A known to accelerate human aging.

Authors:  Thomas Dechat; Takeshi Shimi; Stephen A Adam; Antonio E Rusinol; Douglas A Andres; H Peter Spielmann; Michael S Sinensky; Robert D Goldman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-14       Impact factor: 11.205

9.  Primary laminopathy fibroblasts display altered genome organization and apoptosis.

Authors:  Karen J Meaburn; Erik Cabuy; Gisele Bonne; Nicolas Levy; Glenn E Morris; Giuseppe Novelli; Ian R Kill; Joanna M Bridger
Journal:  Aging Cell       Date:  2007-02-05       Impact factor: 9.304

10.  A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence.

Authors:  R Ileng Kumaran; David L Spector
Journal:  J Cell Biol       Date:  2008-01-14       Impact factor: 10.539

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  245 in total

1.  Unravelling the lamina network.

Authors:  Monika Zwerger; Ohad Medalia
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-15       Impact factor: 94.444

Review 2.  Understanding the roles of nuclear A- and B-type lamins in brain development.

Authors:  Stephen G Young; Hea-Jin Jung; Catherine Coffinier; Loren G Fong
Journal:  J Biol Chem       Date:  2012-03-13       Impact factor: 5.157

Review 3.  The nucleoskeleton as a genome-associated dynamic 'network of networks'.

Authors:  Dan N Simon; Katherine L Wilson
Journal:  Nat Rev Mol Cell Biol       Date:  2011-10-05       Impact factor: 94.444

Review 4.  Lamins at a glance.

Authors:  Chin Yee Ho; Jan Lammerding
Journal:  J Cell Sci       Date:  2012-05-01       Impact factor: 5.285

Review 5.  Nuclear lamins.

Authors:  Thomas Dechat; Stephen A Adam; Pekka Taimen; Takeshi Shimi; Robert D Goldman
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-09-08       Impact factor: 10.005

Review 6.  The nucleus introduced.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-05-01       Impact factor: 10.005

7.  The nuclear envelope at a glance.

Authors:  Katherine L Wilson; Jason M Berk
Journal:  J Cell Sci       Date:  2010-06-15       Impact factor: 5.285

8.  Inheriting nuclear organization: can nuclear lamins impart spatial memory during post-mitotic nuclear assembly?

Authors:  Catherine Martin; Songbi Chen; Dean A Jackson
Journal:  Chromosome Res       Date:  2010-06-22       Impact factor: 5.239

9.  Nuclear lamins in cancer.

Authors:  Jerome Irianto; Charlotte R Pfeifer; Irena L Ivanovska; Joe Swift; Dennis E Discher
Journal:  Cell Mol Bioeng       Date:  2016-04-18       Impact factor: 2.321

10.  Do lamin B1 and lamin B2 have redundant functions?

Authors:  John M Lee; Hea-Jin Jung; Loren G Fong; Stephen G Young
Journal:  Nucleus       Date:  2014 Jul-Aug       Impact factor: 4.197

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