Literature DB >> 18056419

Dynamics and interplay of nuclear architecture, genome organization, and gene expression.

Robert Schneider1, Rudolf Grosschedl.   

Abstract

The organization of the genome in the nucleus of a eukaryotic cell is fairly complex and dynamic. Various features of the nuclear architecture, including compartmentalization of molecular machines and the spatial arrangement of genomic sequences, help to carry out and regulate nuclear processes, such as DNA replication, DNA repair, gene transcription, RNA processing, and mRNA transport. Compartmentalized multiprotein complexes undergo extensive modifications or exchange of protein subunits, allowing for an exquisite dynamics of structural components and functional processes of the nucleus. The architecture of the interphase nucleus is linked to the spatial arrangement of genes and gene clusters, the structure of chromatin, and the accessibility of regulatory DNA elements. In this review, we discuss recent studies that have provided exciting insight into the interplay between nuclear architecture, genome organization, and gene expression.

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Year:  2007        PMID: 18056419     DOI: 10.1101/gad.1604607

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  177 in total

Review 1.  Nuclear functions of actin.

Authors:  Neus Visa; Piergiorgio Percipalle
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-17       Impact factor: 10.005

Review 2.  Chromosome territories.

Authors:  Thomas Cremer; Marion Cremer
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03       Impact factor: 10.005

3.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

4.  Requirement for Sun1 in the expression of meiotic reproductive genes and piRNA.

Authors:  Ya-Hui Chi; Lily I Cheng; Tim Myers; Jerrold M Ward; Elizabeth Williams; Qin Su; Larry Faucette; Jing-Ya Wang; Kuan-Teh Jeang
Journal:  Development       Date:  2009-02-11       Impact factor: 6.868

5.  Chromatin stability at low concentration depends on histone octamer saturation levels.

Authors:  Thomas A Hagerman; Qiang Fu; Benoit Molinié; James Denvir; Stuart Lindsay; Philippe T Georgel
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

6.  Dynamic reprogramming of transcription factors to and from the subtelomere.

Authors:  H Craig Mak; Lorraine Pillus; Trey Ideker
Journal:  Genome Res       Date:  2009-04-16       Impact factor: 9.043

7.  PRDM1/BLIMP1 is widely distributed to the nascent fetal-placental interface in the mouse gastrula.

Authors:  Maria M Mikedis; Karen M Downs
Journal:  Dev Dyn       Date:  2016-11-12       Impact factor: 3.780

Review 8.  Epigenetic regulation in human brain-focus on histone lysine methylation.

Authors:  Schahram Akbarian; Hsien-Sung Huang
Journal:  Biol Psychiatry       Date:  2008-09-24       Impact factor: 13.382

9.  The meaning of gene positioning.

Authors:  Takumi Takizawa; Karen J Meaburn; Tom Misteli
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

Review 10.  The control of histone methylation and gene expression by oxidative stress, hypoxia, and metals.

Authors:  Yana Chervona; Max Costa
Journal:  Free Radic Biol Med       Date:  2012-07-25       Impact factor: 7.376

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