Literature DB >> 19113524

Abrupt transition from a free, repulsive to a condensed, attractive DNA phase, induced by multivalent polyamine cations.

Xiangyun Qiu1, Kurt Andresen, Jessica S Lamb, Lisa W Kwok, Lois Pollack.   

Abstract

We have investigated the energetics of DNA condensation by multivalent polyamine cations. Solution small angle x-ray scattering was used to monitor interactions between short 25 base pair dsDNA strands in the free supernatant DNA phase that coexists with the condensed DNA phase. Interestingly, when tetravalent spermine is used, significant inter-DNA repulsion is observed in the free phase, in contrast with the presumed inter-DNA attraction in the coexisting condensed phase. DNA condensation thus appears to be a discrete, first-order-like, transition from a repulsive gaseous to an attractive condensed solid phase, in accord with the reported all-or-none condensation of giant DNA. We further quantify the electrostatic repulsive potentials in the free DNA phase and estimate the number of additional spermine cations that bind to DNA upon condensation.

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Year:  2008        PMID: 19113524      PMCID: PMC2843915          DOI: 10.1103/PhysRevLett.101.228101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  16 in total

1.  Large discrete transition in a single DNA molecule appears continuous in the ensemble.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-04-15       Impact factor: 9.161

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Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

Review 3.  Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution.

Authors:  Michel H Koch; Patrice Vachette; Dmitri I Svergun
Journal:  Q Rev Biophys       Date:  2003-05       Impact factor: 5.318

4.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

5.  Measuring inter-DNA potentials in solution.

Authors:  Xiangyun Qiu; Lisa W Kwok; Hye Yoon Park; Jessica S Lamb; Kurt Andresen; Lois Pollack
Journal:  Phys Rev Lett       Date:  2006-04-03       Impact factor: 9.161

6.  Inter-DNA attraction mediated by divalent counterions.

Authors:  Xiangyun Qiu; Kurt Andresen; Lisa W Kwok; Jessica S Lamb; Hye Yoon Park; Lois Pollack
Journal:  Phys Rev Lett       Date:  2007-07-20       Impact factor: 9.161

Review 7.  DNA condensation by multivalent cations.

Authors:  V A Bloomfield
Journal:  Biopolymers       Date:  1997       Impact factor: 2.505

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Authors:  Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

9.  Ionic effects on the elasticity of single DNA molecules.

Authors:  C G Baumann; S B Smith; V A Bloomfield; C Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  1997-06-10       Impact factor: 11.205

10.  Incomplete ion dissociation underlies the weakened attraction between DNA helices at high spermidine concentrations.

Authors:  Jie Yang; Donald C Rau
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

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  25 in total

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3.  Spermine Condenses DNA, but Not RNA Duplexes.

Authors:  Andrea M Katz; Igor S Tolokh; Suzette A Pabit; Nathan Baker; Alexey V Onufriev; Lois Pollack
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

4.  Hydration of counterions interacting with DNA double helix: a molecular dynamics study.

Authors:  Sergiy Perepelytsya
Journal:  J Mol Model       Date:  2018-06-22       Impact factor: 1.810

5.  Ion-mediated RNA structural collapse: effect of spatial confinement.

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Journal:  Biophys J       Date:  2012-08-22       Impact factor: 4.033

6.  Helical structure determines different susceptibilities of dsDNA, dsRNA, and tsDNA to counterion-induced condensation.

Authors:  Alexei A Kornyshev; Sergey Leikin
Journal:  Biophys J       Date:  2013-05-07       Impact factor: 4.033

7.  Pattern preferences of DNA nucleotide motifs by polyamines putrescine2+, spermidine3+ and spermine4.

Authors:  Sergiy Perepelytsya; Jozef Uličný; Aatto Laaksonen; Francesca Mocci
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

8.  Competitive Binding of Mg2+ and Na+ Ions to Nucleic Acids: From Helices to Tertiary Structures.

Authors:  Kun Xi; Feng-Hua Wang; Gui Xiong; Zhong-Liang Zhang; Zhi-Jie Tan
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

9.  Salt-dependent folding energy landscape of RNA three-way junction.

Authors:  Gengsheng Chen; Zhi-Jie Tan; Shi-Jie Chen
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

10.  A universal description for the experimental behavior of salt-(in)dependent oligocation-induced DNA condensation.

Authors:  Nikolay Korolev; Nikolay V Berezhnoy; Khee Dong Eom; James P Tam; Lars Nordenskiöld
Journal:  Nucleic Acids Res       Date:  2009-11       Impact factor: 16.971

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