Literature DB >> 9591479

DNA condensation by multivalent cations.

V A Bloomfield1.   

Abstract

In the presence of multivalent cations, high molecular weight DNA undergoes a dramatic condensation to a compact, usually highly ordered toroidal structure. This review begins with an overview of DNA condensation: condensing agents, morphology, kinetics, and reversibility, and the minimum size required to form orderly condensates. It then summarizes the statistical mechanics of the collapse of stiff polymers, which shows why DNA condensation is abrupt and why toroids are favored structures. Various ways to estimate or measure intermolecular forces in DNA condensation are discussed, all of them agreeing that the free energy change per base pair is very small, on the order of 1% of thermal energy. Experimental evidence is surveyed showing that DNA condensation occurs when about 90% of its charge is neutralized by counterions. The various intermolecular forces whose interplay gives rise to DNA condensation are then reviewed. The entropy loss upon collapse of the expanded wormlike coil costs free energy, and stiffness sets limits on tight curvature. However, the dominant contributions seem to come from ions and water. Electrostatic repulsions must be overcome by high salt concentrations or by the correlated fluctuations of territorially bound multivalent cations. Hydration must be adjusted to allow a cooperative accommodation of the water structure surrounding surface groups on the DNA helices as they approach. Undulations of the DNA in its confined surroundings extend the range of the electrostatic forces. The condensing ions may also subtly modify the local structure of the double helix.

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Year:  1997        PMID: 9591479     DOI: 10.1002/(SICI)1097-0282(1997)44:3<269::AID-BIP6>3.0.CO;2-T

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  220 in total

1.  Brownian dynamics simulation of DNA condensation.

Authors:  P E Sottas; E Larquet; A Stasiak; J Dubochet
Journal:  Biophys J       Date:  1999-10       Impact factor: 4.033

2.  Monitoring DNA/poly-L-lysine polyplex formation with time-resolved multiangle laser light scattering.

Authors:  E Lai; J H van Zanten
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

3.  DNA condensation in two dimensions.

Authors:  I Koltover; K Wagner; C R Safinya
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

4.  DNA delivery by phage as a strategy for encapsulating toroidal condensates of arbitrary size into liposomes.

Authors:  O Lambert; L Letellier; W M Gelbart; J L Rigaud
Journal:  Proc Natl Acad Sci U S A       Date:  2000-06-20       Impact factor: 11.205

5.  Closing the ring: links between SMC proteins and chromosome partitioning, condensation, and supercoiling.

Authors:  V F Holmes; N R Cozzarelli
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

6.  Intermolecular interactions and water structure in a condensed phase B-DNA crystal.

Authors:  G R Clark; C J Squire; L J Baker; R F Martin; J White
Journal:  Nucleic Acids Res       Date:  2000-03-01       Impact factor: 16.971

7.  Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model.

Authors:  A P Minton
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

8.  The reversible condensation and expansion of the rotavirus genome.

Authors:  J B Pesavento; J A Lawton; M E Estes; B V Venkataram Prasad
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

9.  Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: the fine structure of DNA toroids.

Authors:  N V Hud; K H Downing
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-04       Impact factor: 11.205

10.  Entrapment and condensation of DNA in neutral reverse micelles.

Authors:  Vladimir G Budker; Paul M Slattum; Sean D Monahan; Jon A Wolff
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

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