Literature DB >> 9177192

Ionic effects on the elasticity of single DNA molecules.

C G Baumann1, S B Smith, V A Bloomfield, C Bustamante.   

Abstract

We used a force-measuring laser tweezers apparatus to determine the elastic properties of lambda-bacteriophage DNA as a function of ionic strength and in the presence of multivalent cations. The electrostatic contribution to the persistence length P varied as the inverse of the ionic strength in monovalent salt, as predicted by the standard worm-like polyelectrolyte model. However, ionic strength is not always the dominant variable in determining the elastic properties of DNA. Monovalent and multivalent ions have quite different effects even when present at the same ionic strength. Multivalent ions lead to P values as low as 250-300 A, well below the high-salt "fully neutralized" value of 450-500 A characteristic of DNA in monovalent salt. The ions Mg2+ and Co(NH3)63+, in which the charge is centrally concentrated, yield lower P values than the polyamines putrescine2+ and spermidine3+, in which the charge is linearly distributed. The elastic stretch modulus, S, and P display opposite trends with ionic strength, in contradiction to predictions of macroscopic elasticity theory. DNA is well described as a worm-like chain at concentrations of trivalent cations capable of inducing condensation, if condensation is prevented by keeping the molecule stretched. A retractile force appears in the presence of multivalent cations at molecular extensions that allow intramolecular contacts, suggesting condensation in stretched DNA occurs by a "thermal ratchet" mechanism.

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Year:  1997        PMID: 9177192      PMCID: PMC21024          DOI: 10.1073/pnas.94.12.6185

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

1.  Persistence length and bending dynamics of DNA from electrooptical measurements at high salt concentrations.

Authors:  D Porschke
Journal:  Biophys Chem       Date:  1991-05       Impact factor: 2.352

Review 2.  Packaged DNA. An elastic model.

Authors:  G S Manning
Journal:  Cell Biophys       Date:  1985-03

Review 3.  Flexibility of DNA.

Authors:  P J Hagerman
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

4.  Structure and dynamics of double helices in solution: modes of DNA bending.

Authors:  D Porschke
Journal:  J Biomol Struct Dyn       Date:  1986-12

5.  Ionic and structural effects on the thermal helix-coil transition of DNA complexed with natural and synthetic polyamines.

Authors:  T J Thomas; V A Bloomfield
Journal:  Biopolymers       Date:  1984-07       Impact factor: 2.505

6.  Precollapse of T7 DNA by spermidine at low ionic strength: a linear dichroism and intrinsic viscosity study.

Authors:  W A Baase; P W Staskus; S A Allison
Journal:  Biopolymers       Date:  1984-12       Impact factor: 2.505

7.  25Mg-NMR investigations of the magnesium ion-DNA interaction.

Authors:  D M Rose; C F Polnaszek; R G Bryant
Journal:  Biopolymers       Date:  1982-03       Impact factor: 2.505

8.  The anatomy of A-, B-, and Z-DNA.

Authors:  R E Dickerson; H R Drew; B N Conner; R M Wing; A V Fratini; M L Kopka
Journal:  Science       Date:  1982-04-30       Impact factor: 47.728

9.  Nuclear magnetic resonance studies of polyamine binding to a defined DNA sequence.

Authors:  D E Wemmer; K S Srivenugopal; B R Reid; D R Morris
Journal:  J Mol Biol       Date:  1985-09-20       Impact factor: 5.469

10.  Secondary conformational polymorphism of nucleic acids as a possible functional link between cellular parameters and DNA packaging processes.

Authors:  Z Reich; R Ghirlando; A Minsky
Journal:  Biochemistry       Date:  1991-08-06       Impact factor: 3.162

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  272 in total

1.  Force-induced melting of the DNA double helix 1. Thermodynamic analysis.

Authors:  I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

2.  Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting.

Authors:  M C Williams; J R Wenner; I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-02       Impact factor: 4.033

3.  Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching.

Authors:  M C Williams; J R Wenner; I Rouzina; V A Bloomfield
Journal:  Biophys J       Date:  2001-04       Impact factor: 4.033

4.  Electrostatic-undulatory theory of plectonemically supercoiled DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

5.  Replication by a single DNA polymerase of a stretched single-stranded DNA.

Authors:  B Maier; D Bensimon; V Croquette
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

6.  Kinetics and mechanism of DNA uptake into the cell nucleus.

Authors:  H Salman; D Zbaida; Y Rabin; D Chatenay; M Elbaum
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-05       Impact factor: 11.205

7.  Mechanism for nucleic acid chaperone activity of HIV-1 nucleocapsid protein revealed by single molecule stretching.

Authors:  M C Williams; I Rouzina; J R Wenner; R J Gorelick; K Musier-Forsyth; V A Bloomfield
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-08       Impact factor: 11.205

8.  Direct measurement of single synthetic vertebrate thick filament elasticity using nanofabricated cantilevers.

Authors:  Dwayne Dunaway; Mark Fauver; Gerald Pollack
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

9.  Shear-induced assembly of lambda-phage DNA.

Authors:  C Haber; D Wirtz
Journal:  Biophys J       Date:  2000-09       Impact factor: 4.033

Review 10.  Optical tweezers experiments resolve distinct modes of DNA-protein binding.

Authors:  Micah J McCauley; Mark C Williams
Journal:  Biopolymers       Date:  2009-04       Impact factor: 2.505

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