Literature DB >> 19047990

Urm1 at the crossroad of modifications. 'Protein Modifications: Beyond the Usual Suspects' Review Series.

Patrick G A Pedrioli1, Sebastian Leidel, Kay Hofmann.   

Abstract

The ubiquitin-like protein Urm1 can be covalently conjugated to other proteins, such as the yeast thioredoxin peroxidase protein Ahp1p, through a mechanism involving the ubiquitin E1-like enzyme Uba4. Recent findings have revealed a second function of Urm1 as a sulphur carrier in the thiolation of eukaryotic cytoplasmic transfer RNAs (tRNAs). Interestingly, this new role of Urm1 is similar to the sulphur-carrier activity of its prokaryotic counterparts, strengthening the hypothesis that Urm1 is a molecular fossil of the ubiquitin-like protein family. Here, we discuss the function of Urm1 in light of its dual role in protein and RNA modification.

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Year:  2008        PMID: 19047990      PMCID: PMC2603462          DOI: 10.1038/embor.2008.209

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  46 in total

1.  Urmylation controls Nil1p and Gln3p-dependent expression of nitrogen-catabolite repressed genes in Saccharomyces cerevisiae.

Authors:  Marta Rubio-Texeira
Journal:  FEBS Lett       Date:  2007-01-18       Impact factor: 4.124

2.  A conserved cysteine is essential for Pex4p-dependent ubiquitination of the peroxisomal import receptor Pex5p.

Authors:  Chris Williams; Marlene van den Berg; Richard R Sprenger; Ben Distel
Journal:  J Biol Chem       Date:  2007-06-05       Impact factor: 5.157

Review 3.  Elucidating biosynthetic pathways for vitamins and cofactors.

Authors:  Michael E Webb; Andrée Marquet; Ralf R Mendel; Fabrice Rébeillé; Alison G Smith
Journal:  Nat Prod Rep       Date:  2007-09-12       Impact factor: 13.423

4.  The conserved Wobble uridine tRNA thiolase Ctu1-Ctu2 is required to maintain genome integrity.

Authors:  Monique Dewez; Fanélie Bauer; Marc Dieu; Martine Raes; Jean Vandenhaute; Damien Hermand
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-07       Impact factor: 11.205

5.  The sensitivity of yeast mutants to oleic acid implicates the peroxisome and other processes in membrane function.

Authors:  Daniel Lockshon; Lauren E Surface; Emily O Kerr; Matt Kaeberlein; Brian K Kennedy
Journal:  Genetics       Date:  2006-12-06       Impact factor: 4.562

6.  A conserved modified wobble nucleoside (mcm5s2U) in lysyl-tRNA is required for viability in yeast.

Authors:  Glenn R Björk; Bo Huang; Olof P Persson; Anders S Byström
Journal:  RNA       Date:  2007-06-25       Impact factor: 4.942

7.  Eukaryotic wobble uridine modifications promote a functionally redundant decoding system.

Authors:  Marcus J O Johansson; Anders Esberg; Bo Huang; Glenn R Björk; Anders S Byström
Journal:  Mol Cell Biol       Date:  2008-03-10       Impact factor: 4.272

8.  Deletion of the MTO2 gene related to tRNA modification causes a failure in mitochondrial RNA metabolism in the yeast Saccharomyces cerevisiae.

Authors:  Xinjian Wang; Qingfeng Yan; Min-Xin Guan
Journal:  FEBS Lett       Date:  2007-08-07       Impact factor: 4.124

9.  Kluyveromyces lactis gamma-toxin, a ribonuclease that recognizes the anticodon stem loop of tRNA.

Authors:  Jian Lu; Anders Esberg; Bo Huang; Anders S Byström
Journal:  Nucleic Acids Res       Date:  2007-12-20       Impact factor: 16.971

10.  Annotating novel genes by integrating synthetic lethals and genomic information.

Authors:  Daniel Schöner; Markus Kalisch; Christian Leisner; Lukas Meier; Marc Sohrmann; Mahamadou Faty; Yves Barral; Matthias Peter; Wilhelm Gruissem; Peter Bühlmann
Journal:  BMC Syst Biol       Date:  2008-01-14
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  27 in total

Review 1.  Cardiac function and disease: emerging role of small ubiquitin-related modifier.

Authors:  Jun Wang
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2010-12-31

2.  Role of the ubiquitin-like protein Urm1 as a noncanonical lysine-directed protein modifier.

Authors:  Annemarthe G Van der Veen; Kenji Schorpp; Christian Schlieker; Ludovico Buti; Jadyn R Damon; Eric Spooner; Hidde L Ploegh; Stefan Jentsch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-05       Impact factor: 11.205

Review 3.  tRNA wobble modifications and protein homeostasis.

Authors:  Namit Ranjan; Marina V Rodnina
Journal:  Translation (Austin)       Date:  2016-01-28

Review 4.  SAMPyling proteins in archaea.

Authors:  K Heran Darwin; Kay Hofmann
Journal:  Trends Biochem Sci       Date:  2010-05-23       Impact factor: 13.807

Review 5.  Ubiquitin-like proteins and their roles in archaea.

Authors:  Julie A Maupin-Furlow
Journal:  Trends Microbiol       Date:  2012-11-08       Impact factor: 17.079

6.  Urm1: an essential regulator of JNK signaling and oxidative stress in Drosophila melanogaster.

Authors:  B Khoshnood; I Dacklin; C Grabbe
Journal:  Cell Mol Life Sci       Date:  2015-12-29       Impact factor: 9.261

7.  E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea.

Authors:  Hugo V Miranda; Nikita Nembhard; Dan Su; Nathaniel Hepowit; David J Krause; Jonathan R Pritz; Cortlin Phillips; Dieter Söll; Julie A Maupin-Furlow
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

8.  Crystallization and preliminary X-ray analysis of the yeast tRNA-thiouridine modification protein 1 (Tum1p).

Authors:  Rui Qiu; Fengbin Wang; Meiruo Liu; Zhenxing Yang; Tong Wu; Chaoneng Ji
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-07-27

Review 9.  The dual role of ubiquitin-like protein Urm1 as a protein modifier and sulfur carrier.

Authors:  Fengbin Wang; Meiruo Liu; Rui Qiu; Chaoneng Ji
Journal:  Protein Cell       Date:  2011-09-09       Impact factor: 14.870

Review 10.  Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.

Authors:  K Heran Darwin
Journal:  Nat Rev Microbiol       Date:  2009-06-01       Impact factor: 60.633

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