Literature DB >> 27335723

tRNA wobble modifications and protein homeostasis.

Namit Ranjan1, Marina V Rodnina1.   

Abstract

tRNA is a central component of the protein synthesis machinery in the cell. In living cells, tRNAs undergo numerous post-transcriptional modifications. In particular, modifications at the anticodon loop play an important role in ensuring efficient protein synthesis, maintaining protein homeostasis, and helping cell adaptation and survival. Hypo-modification of the wobble position of the tRNA anticodon loop is of particular relevance for translation regulation and is implicated in various human diseases. In this review we summarize recent evidence of how methyl and thiol modifications in eukaryotic tRNA at position 34 affect cellular fitness and modulate regulatory circuits at normal conditions and under stress.

Entities:  

Keywords:  HIV-1; decoding; ribosomal frameshifting; ribosome profiling; tRNA modifications; translation regulation

Year:  2016        PMID: 27335723      PMCID: PMC4909423          DOI: 10.1080/21690731.2016.1143076

Source DB:  PubMed          Journal:  Translation (Austin)        ISSN: 2169-0731


  76 in total

1.  Elevated levels of two tRNA species bypass the requirement for elongator complex in transcription and exocytosis.

Authors:  Anders Esberg; Bo Huang; Marcus J O Johansson; Anders S Byström
Journal:  Mol Cell       Date:  2006-10-06       Impact factor: 17.970

2.  Constitutively high dNTP concentration inhibits cell cycle progression and the DNA damage checkpoint in yeast Saccharomyces cerevisiae.

Authors:  Andrei Chabes; Bruce Stillman
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-16       Impact factor: 11.205

3.  Functional recognition of the modified human tRNALys3(UUU) anticodon domain by HIV's nucleocapsid protein and a peptide mimic.

Authors:  William D Graham; Lise Barley-Maloney; Caren J Stark; Amarpreet Kaur; Christina Stolarchuk; Khrystyna Stolyarchuk; Brian Sproat; Grazyna Leszczynska; Andrzej Malkiewicz; Nedal Safwat; Piotr Mucha; Richard Guenther; Paul F Agris
Journal:  J Mol Biol       Date:  2011-07-22       Impact factor: 5.469

4.  An early step in wobble uridine tRNA modification requires the Elongator complex.

Authors:  Bo Huang; Marcus J O Johansson; Anders S Byström
Journal:  RNA       Date:  2005-04       Impact factor: 4.942

5.  Nucleotide sequence of three isoaccepting lysine tRNAs from rabbit liver and SV40-transformed mouse fibroblasts.

Authors:  M Raba; K Limburg; M Burghagen; J R Katze; M Simsek; J E Heckman; U L Rajbhandary; H J Gross
Journal:  Eur J Biochem       Date:  1979-06

6.  The role of modifications in codon discrimination by tRNA(Lys)UUU.

Authors:  Frank V Murphy; Venki Ramakrishnan; Andrzej Malkiewicz; Paul F Agris
Journal:  Nat Struct Mol Biol       Date:  2004-11-21       Impact factor: 15.369

7.  Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems.

Authors:  Yumi Nakai; Masato Nakai; Hideyuki Hayashi
Journal:  J Biol Chem       Date:  2008-07-29       Impact factor: 5.157

8.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

9.  Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.

Authors:  Akiko Noma; Yuriko Sakaguchi; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

10.  Loss of a conserved tRNA anticodon modification perturbs cellular signaling.

Authors:  Boris Zinshteyn; Wendy V Gilbert
Journal:  PLoS Genet       Date:  2013-08-01       Impact factor: 5.917

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  25 in total

Review 1.  The Importance of Being Modified: The Role of RNA Modifications in Translational Fidelity.

Authors:  Paul F Agris; Amithi Narendran; Kathryn Sarachan; Ville Y P Väre; Emily Eruysal
Journal:  Enzymes       Date:  2017-04-22

2.  mRNA and tRNA modification states influence ribosome speed and frame maintenance during poly(lysine) peptide synthesis.

Authors:  Tyler J Smith; Mehmet Tardu; Hem Raj Khatri; Kristin S Koutmou
Journal:  J Biol Chem       Date:  2022-05-17       Impact factor: 5.486

3.  Unraveling the RNA modification code with mass spectrometry.

Authors:  Richard Lauman; Benjamin A Garcia
Journal:  Mol Omics       Date:  2020-04-14

4.  tRNA-modifying enzyme mutations induce codon-specific mistranslation and protein aggregation in yeast.

Authors:  Joana F Tavares; Nick K Davis; Ana Poim; Andreia Reis; Stefanie Kellner; Inês Sousa; Ana R Soares; Gabriela M R Moura; Peter C Dedon; Manuel Santos
Journal:  RNA Biol       Date:  2020-09-17       Impact factor: 4.652

Review 5.  Codon optimality, bias and usage in translation and mRNA decay.

Authors:  Gavin Hanson; Jeff Coller
Journal:  Nat Rev Mol Cell Biol       Date:  2017-10-11       Impact factor: 94.444

6.  Identification of the 3-amino-3-carboxypropyl (acp) transferase enzyme responsible for acp3U formation at position 47 in Escherichia coli tRNAs.

Authors:  Britta Meyer; Carina Immer; Steffen Kaiser; Sunny Sharma; Jun Yang; Peter Watzinger; Lena Weiß; Annika Kotter; Mark Helm; Hans-Michael Seitz; Peter Kötter; Stefanie Kellner; Karl-Dieter Entian; Jens Wöhnert
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

Review 7.  mRNA Translation Gone Awry: Translation Fidelity and Neurological Disease.

Authors:  Mridu Kapur; Susan L Ackerman
Journal:  Trends Genet       Date:  2018-01-16       Impact factor: 11.639

8.  A Natural Variation in PLEIOTROPIC DEVELOPMENTAL DEFECTS Uncovers a Crucial Role for Chloroplast tRNA Modification in Translation and Plant Development.

Authors:  Hui Liu; Ding Ren; Ling Jiang; Xiaojing Li; Yuan Yao; Limin Mi; Wanli Chen; Aowei Mo; Ning Jiang; Jinshui Yang; Peng Chen; Hong Ma; Xiaojin Luo; Pingli Lu
Journal:  Plant Cell       Date:  2020-04-23       Impact factor: 11.277

9.  NSUN3 and ABH1 modify the wobble position of mt-tRNAMet to expand codon recognition in mitochondrial translation.

Authors:  Sara Haag; Katherine E Sloan; Namit Ranjan; Ahmed S Warda; Jens Kretschmer; Charlotte Blessing; Benedikt Hübner; Jan Seikowski; Sven Dennerlein; Peter Rehling; Marina V Rodnina; Claudia Höbartner; Markus T Bohnsack
Journal:  EMBO J       Date:  2016-08-05       Impact factor: 11.598

10.  Elp3 and RlmN: A tale of two mitochondrial tail-anchored radical SAM enzymes in Toxoplasma gondii.

Authors:  Leah R Padgett; Jenna M Lentini; Michael J Holmes; Krista L Stilger; Dragony Fu; William J Sullivan
Journal:  PLoS One       Date:  2018-01-02       Impact factor: 3.240

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