Literature DB >> 23140889

Ubiquitin-like proteins and their roles in archaea.

Julie A Maupin-Furlow1.   

Abstract

This review highlights the finding that ubiquitin-like (Ubl) proteins of archaea (termed SAMPs) function not only as sulfur carriers but also as protein modifiers. UbaA (an E1 ubiquitin-activating enzyme homolog of archaea) is required for the SAMPs to be covalently attached to proteins. The SAMPs and UbaA are also needed to form sulfur-containing biomolecules (e.g., thiolated tRNA and molybdenum cofactor). These findings provide a new perspective on how Ubl proteins can serve as both sulfur carriers and protein modifiers in the absence of canonical E2 ubiquitin conjugating or E3 ubiquitin ligase enzyme homologs.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23140889      PMCID: PMC3534793          DOI: 10.1016/j.tim.2012.09.006

Source DB:  PubMed          Journal:  Trends Microbiol        ISSN: 0966-842X            Impact factor:   17.079


  80 in total

1.  Attachment of the ubiquitin-related protein Urm1p to the antioxidant protein Ahp1p.

Authors:  April S Goehring; David M Rivers; George F Sprague
Journal:  Eukaryot Cell       Date:  2003-10

Review 2.  Ubiquitin-like proteins.

Authors:  Annemarthe G van der Veen; Hidde L Ploegh
Journal:  Annu Rev Biochem       Date:  2012-03-09       Impact factor: 23.643

Review 3.  Mechanism and function of deubiquitinating enzymes.

Authors:  Alexander Y Amerik; Mark Hochstrasser
Journal:  Biochim Biophys Acta       Date:  2004-11-29

4.  Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing.

Authors:  Shravan Kumar Mishra; Tim Ammon; Grzegorz M Popowicz; Marcin Krajewski; Roland J Nagel; Manuel Ares; Tad A Holak; Stefan Jentsch
Journal:  Nature       Date:  2011-05-25       Impact factor: 49.962

5.  Role of the ubiquitin-like protein Urm1 as a noncanonical lysine-directed protein modifier.

Authors:  Annemarthe G Van der Veen; Kenji Schorpp; Christian Schlieker; Ludovico Buti; Jadyn R Damon; Eric Spooner; Hidde L Ploegh; Stefan Jentsch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-05       Impact factor: 11.205

6.  E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea.

Authors:  Hugo V Miranda; Nikita Nembhard; Dan Su; Nathaniel Hepowit; David J Krause; Jonathan R Pritz; Cortlin Phillips; Dieter Söll; Julie A Maupin-Furlow
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-28       Impact factor: 11.205

7.  Thio-modification of yeast cytosolic tRNA requires a ubiquitin-related system that resembles bacterial sulfur transfer systems.

Authors:  Yumi Nakai; Masato Nakai; Hideyuki Hayashi
Journal:  J Biol Chem       Date:  2008-07-29       Impact factor: 5.157

8.  Genetic and proteomic analyses of a proteasome-activating nucleotidase A mutant of the haloarchaeon Haloferax volcanii.

Authors:  P Aaron Kirkland; Malgorzata A Gil; Ivanka M Karadzic; Julie A Maupin-Furlow
Journal:  J Bacteriol       Date:  2007-10-26       Impact factor: 3.490

9.  O-phospho-L-serine and the thiocarboxylated sulfur carrier protein CysO-COSH are substrates for CysM, a cysteine synthase from Mycobacterium tuberculosis.

Authors:  Seán E O'Leary; Christopher T Jurgenson; Steven E Ealick; Tadhg P Begley
Journal:  Biochemistry       Date:  2008-10-09       Impact factor: 3.162

10.  Mechanistic characterization of the sulfur-relay system for eukaryotic 2-thiouridine biogenesis at tRNA wobble positions.

Authors:  Akiko Noma; Yuriko Sakaguchi; Tsutomu Suzuki
Journal:  Nucleic Acids Res       Date:  2009-01-16       Impact factor: 16.971

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  23 in total

Review 1.  The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life.

Authors:  Thomas Cavalier-Smith
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-09-02       Impact factor: 10.005

Review 2.  The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes.

Authors:  Eugene V Koonin; Natalya Yutin
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-04-01       Impact factor: 10.005

Review 3.  Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria).

Authors:  Thomas Cavalier-Smith; Ema E-Yung Chao
Journal:  Protoplasma       Date:  2020-01-03       Impact factor: 3.356

Review 4.  Detection and Degradation of Stalled Nascent Chains via Ribosome-Associated Quality Control.

Authors:  Cole S Sitron; Onn Brandman
Journal:  Annu Rev Biochem       Date:  2020-06-20       Impact factor: 23.643

5.  Rhodanese-Like Domain Protein UbaC and Its Role in Ubiquitin-Like Protein Modification and Sulfur Mobilization in Archaea.

Authors:  Nathaniel L Hepowit; Julie A Maupin-Furlow
Journal:  J Bacteriol       Date:  2019-07-10       Impact factor: 3.490

6.  Mycobacterium tuberculosis proteasomal ATPase Mpa has a β-grasp domain that hinders docking with the proteasome core protease.

Authors:  Yujie Wu; Kuan Hu; Defeng Li; Lin Bai; Shaoqing Yang; Jordan B Jastrab; Shuhao Xiao; Yonglin Hu; Susan Zhang; K Heran Darwin; Tao Wang; Huilin Li
Journal:  Mol Microbiol       Date:  2017-05-03       Impact factor: 3.501

Review 7.  Prokaryotic ubiquitin-like protein modification.

Authors:  Julie A Maupin-Furlow
Journal:  Annu Rev Microbiol       Date:  2014-05-29       Impact factor: 15.500

8.  Mechanistic insight into protein modification and sulfur mobilization activities of noncanonical E1 and associated ubiquitin-like proteins of Archaea.

Authors:  Nathaniel L Hepowit; Ian Mitchelle S de Vera; Shiyun Cao; Xian Fu; Yifei Wu; Sivakumar Uthandi; Nikita E Chavarria; Markus Englert; Dan Su; Dieter Sӧll; Douglas J Kojetin; Julie A Maupin-Furlow
Journal:  FEBS J       Date:  2016-10       Impact factor: 5.542

9.  The putative tRNA 2-thiouridine synthetase Ncs6 is an essential sulfur carrier in Methanococcus maripaludis.

Authors:  Yuchen Liu; Feng Long; Liangliang Wang; Dieter Söll; William B Whitman
Journal:  FEBS Lett       Date:  2014-02-11       Impact factor: 4.124

Review 10.  Ubiquitin and Ubiquitin-Like Proteins and Domains in Ribosome Production and Function: Chance or Necessity?

Authors:  Sara Martín-Villanueva; Gabriel Gutiérrez; Dieter Kressler; Jesús de la Cruz
Journal:  Int J Mol Sci       Date:  2021-04-22       Impact factor: 5.923

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