Literature DB >> 18957555

Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory?

Steven A Carr, Leigh Anderson.   

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Year:  2008        PMID： 18957555      PMCID： PMC2848668          DOI： 10.1373/clinchem.2008.114686

Source DB:  PubMed          Journal:  Clin Chem        ISSN： 0009-9147            Impact factor:   8.327


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  17 in total

Review 1.  The case for early detection.

Authors:  Ruth Etzioni; Nicole Urban; Scott Ramsey; Martin McIntosh; Stephen Schwartz; Brian Reid; Jerald Radich; Garnet Anderson; Leland Hartwell
Journal:  Nat Rev Cancer       Date:  2003-04       Impact factor: 60.716

2.  The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline.

Authors:  Amanda G Paulovich; Jeffrey R Whiteaker; Andrew N Hoofnagle; Pei Wang
Journal:  Proteomics Clin Appl       Date:  2008-10-01       Impact factor: 3.494

3.  Open source system for analyzing, validating, and storing protein identification data.

Authors:  Robertson Craig; John P Cortens; Ronald C Beavis
Journal:  J Proteome Res       Date:  2004 Nov-Dec       Impact factor: 4.466

Review 4.  Protein biomarker discovery and validation: the long and uncertain path to clinical utility.

Authors:  Nader Rifai; Michael A Gillette; Steven A Carr
Journal:  Nat Biotechnol       Date:  2006-08       Impact factor: 54.908

5.  Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers.

Authors:  Jeffrey R Whiteaker; Lei Zhao; Heidi Y Zhang; Li-Chia Feng; Brian D Piening; Leigh Anderson; Amanda G Paulovich
Journal:  Anal Biochem       Date:  2006-12-20       Impact factor: 3.365

6.  Capillary-based multi nanoelectrospray emitters: improvements in ion transmission efficiency and implementation with capillary reversed-phase LC-ESI-MS.

Authors:  Ryan T Kelly; Jason S Page; Rui Zhao; Wei-Jun Qian; Heather M Mottaz; Keqi Tang; Richard D Smith
Journal:  Anal Chem       Date:  2007-11-29       Impact factor: 6.986

7.  Subambient pressure ionization with nanoelectrospray source and interface for improved sensitivity in mass spectrometry.

Authors:  Jason S Page; Keqi Tang; Ryan T Kelly; Richard D Smith
Journal:  Anal Chem       Date:  2008-02-01       Impact factor: 6.986

8.  Accurate inclusion mass screening: a bridge from unbiased discovery to targeted assay development for biomarker verification.

Authors:  Jacob D Jaffe; Hasmik Keshishian; Betty Chang; Theresa A Addona; Michael A Gillette; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2008-06-04       Impact factor: 5.911

9.  Serum thyroglobulin autoantibodies: prevalence, influence on serum thyroglobulin measurement, and prognostic significance in patients with differentiated thyroid carcinoma.

Authors:  C A Spencer; M Takeuchi; M Kazarosyan; C C Wang; R B Guttler; P A Singer; S Fatemi; J S LoPresti; J T Nicoloff
Journal:  J Clin Endocrinol Metab       Date:  1998-04       Impact factor: 5.958

10.  The PeptideAtlas project.

Authors:  Frank Desiere; Eric W Deutsch; Nichole L King; Alexey I Nesvizhskii; Parag Mallick; Jimmy Eng; Sharon Chen; James Eddes; Sandra N Loevenich; Ruedi Aebersold
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971
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  48 in total

1.  Simultaneous quantification of apolipoprotein A-I and apolipoprotein B by liquid-chromatography-multiple- reaction-monitoring mass spectrometry.

Authors:  Sean A Agger; Luke C Marney; Andrew N Hoofnagle
Journal:  Clin Chem       Date:  2010-10-05       Impact factor: 8.327

2.  Simultaneous phenotyping and quantification of α-1-antitrypsin by liquid chromatography-tandem mass spectrometry.

Authors:  Yuhong Chen; Melissa R Snyder; Yi Zhu; Linda J Tostrud; Linda M Benson; Jerry A Katzmann; H Robert Bergen
Journal:  Clin Chem       Date:  2011-06-02       Impact factor: 8.327

3.  Interlaboratory evaluation of automated, multiplexed peptide immunoaffinity enrichment coupled to multiple reaction monitoring mass spectrometry for quantifying proteins in plasma.

Authors:  Eric Kuhn; Jeffrey R Whiteaker; D R Mani; Angela M Jackson; Lei Zhao; Matthew E Pope; Derek Smith; Keith D Rivera; N Leigh Anderson; Steven J Skates; Terry W Pearson; Amanda G Paulovich; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2011-12-22       Impact factor: 5.911

4.  Enhanced sensitivity for selected reaction monitoring mass spectrometry-based targeted proteomics using a dual stage electrodynamic ion funnel interface.

Authors:  Mahmud Hossain; David T Kaleta; Errol W Robinson; Tao Liu; Rui Zhao; Jason S Page; Ryan T Kelly; Ronald J Moore; Keqi Tang; David G Camp; Wei-Jun Qian; Richard D Smith
Journal:  Mol Cell Proteomics       Date:  2010-04-21       Impact factor: 5.911

5.  Fusion peptides from oncogenic chimeric proteins as putative specific biomarkers of cancer.

Authors:  Kevin P Conlon; Venkatesha Basrur; Delphine Rolland; Thomas Wolfe; Alexey I Nesvizhskii; Michael J MacCoss; Megan S Lim; Kojo S J Elenitoba-Johnson
Journal:  Mol Cell Proteomics       Date:  2013-07-08       Impact factor: 5.911

Review 6.  Stable-isotope dilution LC–MS for quantitative biomarker analysis.

Authors:  Eugene Ciccimaro; Ian A Blair
Journal:  Bioanalysis       Date:  2010-02       Impact factor: 2.681

Review 7.  Proteomic studies of urinary biomarkers for prostate, bladder and kidney cancers.

Authors:  Steven L Wood; Margaret A Knowles; Douglas Thompson; Peter J Selby; Rosamonde E Banks
Journal:  Nat Rev Urol       Date:  2013-02-26       Impact factor: 14.432

8.  Protein Biomarker Research in UK Hospital Clinical Biochemistry Laboratories: A Survey of Current Practice and Views.

Authors:  Sophie Hepburn; Rosamonde E Banks; Douglas Thompson
Journal:  Clin Biochem Rev       Date:  2014-05

Review 9.  Quantification of histone modifications using ¹⁵N metabolic labeling.

Authors:  Chunchao Zhang; Yifan Liu; Philip C Andrews
Journal:  Methods       Date:  2013-02-27       Impact factor: 3.608

10.  Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses.

Authors:  Jun Qu; Alan J Lesse; Aimee L Brauer; Jin Cao; Steven R Gill; Timothy F Murphy
Journal:  BMC Microbiol       Date:  2010-06-01       Impact factor: 3.605
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