Literature DB >> 18854147

The meaning of gene positioning.

Takumi Takizawa1, Karen J Meaburn, Tom Misteli.   

Abstract

There is no doubt that genomes are organized nonrandomly in the nucleus of higher eukaryotes. But what is the functional relevance of this nonrandomness? In this Essay, we explore the biological meaning of spatial gene positioning by examining the functional link between the activity of a gene and its radial position in the nucleus.

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Year:  2008        PMID： 18854147      PMCID： PMC3478881          DOI： 10.1016/j.cell.2008.09.026

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  38 in total

1.  Long-range directional movement of an interphase chromosome site.

Authors:  Chien-Hui Chuang; Anne E Carpenter; Beata Fuchsova; Terezina Johnson; Primal de Lanerolle; Andrew S Belmont
Journal:  Curr Biol       Date:  2006-04-18       Impact factor: 10.834

Review 2.  Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions.

Authors:  Christian Lanctôt; Thierry Cheutin; Marion Cremer; Giacomo Cavalli; Thomas Cremer
Journal:  Nat Rev Genet       Date:  2007-02       Impact factor: 53.242

Review 3.  Rise, fall and resurrection of chromosome territories: a historical perspective. Part I. The rise of chromosome territories.

Authors:  Thomas Cremer; C Cremer
Journal:  Eur J Histochem       Date:  2006 Jul-Sep       Impact factor: 3.188

Review 4.  Beyond the sequence: cellular organization of genome function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2007-02-23       Impact factor: 41.582

Review 5.  Transcriptional regulation at the nuclear pore complex.

Authors:  Christopher R Brown; Pamela A Silver
Journal:  Curr Opin Genet Dev       Date:  2007-02-20       Impact factor: 5.578

6.  Characterization of the Drosophila melanogaster genome at the nuclear lamina.

Authors:  Helen Pickersgill; Bernike Kalverda; Elzo de Wit; Wendy Talhout; Maarten Fornerod; Bas van Steensel
Journal:  Nat Genet       Date:  2006-07-30       Impact factor: 38.330

7.  Local gene density predicts the spatial position of genetic loci in the interphase nucleus.

Authors:  Andrea E Murmann; Juntao Gao; Marissa Encinosa; Mathieu Gautier; Marcus E Peter; Roland Eils; Peter Lichter; Janet D Rowley
Journal:  Exp Cell Res       Date:  2005-10-03       Impact factor: 3.905

8.  The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation.

Authors:  Tobias Ragoczy; M A Bender; Agnes Telling; Rachel Byron; Mark Groudine
Journal:  Genes Dev       Date:  2006-05-16       Impact factor: 11.361

9.  Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila.

Authors:  Sascha Mendjan; Mikko Taipale; Jop Kind; Herbert Holz; Philipp Gebhardt; Malgorzata Schelder; Michiel Vermeulen; Alessia Buscaino; Kent Duncan; Juerg Mueller; Matthias Wilm; Henk G Stunnenberg; Harald Saumweber; Asifa Akhtar
Journal:  Mol Cell       Date:  2006-03-17       Impact factor: 17.970

10.  Neural induction promotes large-scale chromatin reorganisation of the Mash1 locus.

Authors:  Ruth R E Williams; Véronique Azuara; Pascale Perry; Stephan Sauer; Maria Dvorkina; Helle Jørgensen; Jeffery Roix; Philip McQueen; Tom Misteli; Matthias Merkenschlager; Amanda G Fisher
Journal:  J Cell Sci       Date:  2006-01-01       Impact factor: 5.285
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  112 in total

1.  Parallel genome universes.

Authors:  Tom Misteli
Journal:  Nat Biotechnol       Date:  2012-01-09       Impact factor: 54.908

2.  Aberrant silencing of cancer-related genes by CpG hypermethylation occurs independently of their spatial organization in the nucleus.

Authors:  Hariharan P Easwaran; Leander Van Neste; Leslie Cope; Subhojit Sen; Helai P Mohammad; Gayle J Pageau; Jeanne B Lawrence; James G Herman; Kornel E Schuebel; Stephen B Baylin
Journal:  Cancer Res       Date:  2010-08-24       Impact factor: 12.701

Review 3.  The nucleus introduced.

Authors:  Thoru Pederson
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-05-01       Impact factor: 10.005

Review 4.  Organization of DNA replication.

Authors:  Vadim O Chagin; Jeffrey H Stear; M Cristina Cardoso
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04       Impact factor: 10.005

Review 5.  Gene positioning.

Authors:  Carmelo Ferrai; Inês Jesus de Castro; Liron Lavitas; Mita Chotalia; Ana Pombo
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-19       Impact factor: 10.005

6.  Memories of lost enhancers.

Authors:  Ranjan Sen; Rudolf Grosschedl
Journal:  Genes Dev       Date:  2010-05-15       Impact factor: 11.361

7.  Association of adipogenic genes with SC-35 domains during porcine adipogenesis.

Authors:  Izabela Szczerbal; Joanna M Bridger
Journal:  Chromosome Res       Date:  2010-12-03       Impact factor: 5.239

Review 8.  Structure determination of genomic domains by satisfaction of spatial restraints.

Authors:  Davide Baù; Marc A Marti-Renom
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

9.  The genome in space and time: does form always follow function? How does the spatial and temporal organization of a eukaryotic genome reflect and influence its functions?

Authors:  Zhijun Duan; Carl Anthony Blau
Journal:  Bioessays       Date:  2012-07-06       Impact factor: 4.345

Review 10.  Long-Range Chromatin Interactions.

Authors:  Job Dekker; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-10-01       Impact factor: 10.005
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