Literature DB >> 20478992

Memories of lost enhancers.

Ranjan Sen1, Rudolf Grosschedl.   

Abstract

Transcriptional enhancers are key determinants of developmentally regulated gene expression. Models of enhancer function must distinguish between analog or digital control of transcription, as well as their requirement to initiate or maintain transcriptional activity of a gene. In light of a recent study by Chong and colleagues (pp. 659-669) providing evidence of a transient requirement of an enhancer associated with the CD4 gene, we discuss possible mechanisms by which transcriptional memory can be propagated in the absence of enhancers.

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Year:  2010        PMID: 20478992      PMCID: PMC2867211          DOI: 10.1101/gad.1930610

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  45 in total

Review 1.  Epigenetic gene silencing by Runx proteins.

Authors:  Ichiro Taniuchi; Dan R Littman
Journal:  Oncogene       Date:  2004-05-24       Impact factor: 9.867

2.  Exploring functional redundancy in the immunoglobulin mu heavy-chain gene enhancer.

Authors:  W Dang; B S Nikolajczyk; R Sen
Journal:  Mol Cell Biol       Date:  1998-11       Impact factor: 4.272

3.  The locus control region is necessary for gene expression in the human beta-globin locus but not the maintenance of an open chromatin structure in erythroid cells.

Authors:  A Reik; A Telling; G Zitnik; D Cimbora; E Epner; M Groudine
Journal:  Mol Cell Biol       Date:  1998-10       Impact factor: 4.272

4.  Extension of chromatin accessibility by nuclear matrix attachment regions.

Authors:  T Jenuwein; W C Forrester; L A Fernández-Herrero; G Laible; M Dull; R Grosschedl
Journal:  Nature       Date:  1997-01-16       Impact factor: 49.962

5.  Formation of stable transcription complexes as assayed by analysis of individual templates.

Authors:  H Weintraub
Journal:  Proc Natl Acad Sci U S A       Date:  1988-08       Impact factor: 11.205

6.  Stable propagation of the active transcriptional state of an immunoglobulin mu gene requires continuous enhancer function.

Authors:  R Grosschedl; M Marx
Journal:  Cell       Date:  1988-11-18       Impact factor: 41.582

7.  Enhancers increase the probability but not the level of gene expression.

Authors:  M C Walters; S Fiering; J Eidemiller; W Magis; M Groudine; D I Martin
Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-18       Impact factor: 11.205

8.  Transcriptional enhancers act in cis to suppress position-effect variegation.

Authors:  M C Walters; W Magis; S Fiering; J Eidemiller; D Scalzo; M Groudine; D I Martin
Journal:  Genes Dev       Date:  1996-01-15       Impact factor: 11.361

9.  SV40 enhancer-binding factors are required at the establishment but not the maintenance step of enhancer-dependent transcriptional activation.

Authors:  X F Wang; K Calame
Journal:  Cell       Date:  1986-10-24       Impact factor: 41.582

10.  The epigenetic stability of the locus control region-deficient IgH locus in mouse hybridoma cells is a clonally varying, heritable feature.

Authors:  Diana Ronai; Maribel Berru; Marc J Shulman
Journal:  Genetics       Date:  2004-05       Impact factor: 4.562

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  16 in total

1.  Molecular analysis of enhancer RNAs and chromatin modifications in the region of their synthesis in Drosophila cells possessing genetic constructs.

Authors:  D M Fedoseeva; O V Kretova; N A Tchurikov
Journal:  Dokl Biochem Biophys       Date:  2012-03-15       Impact factor: 0.788

2.  Molecular analysis of RNA induced by enhancer in Drosophila cells carrying reporter genetic constructs.

Authors:  D M Fedoseeva; O V Kretova; N A Tchurikov
Journal:  Dokl Biochem Biophys       Date:  2010-12-24       Impact factor: 0.788

3.  The eleven-nineteen lysine-rich leukemia gene (ELL2) influences the histone H3 protein modifications accompanying the shift to secretory immunoglobulin heavy chain mRNA production.

Authors:  Christine Milcarek; Michael Albring; Creityeka Langer; Kyung Soo Park
Journal:  J Biol Chem       Date:  2011-08-09       Impact factor: 5.157

4.  The Igκ gene enhancers, E3' and Ed, are essential for triggering transcription.

Authors:  Xiaorong Zhou; Yougui Xiang; William T Garrard
Journal:  J Immunol       Date:  2010-11-12       Impact factor: 5.422

5.  Inducible mouse models illuminate parameters influencing epigenetic inheritance.

Authors:  Mimi Wan; Honggang Gu; Jingxue Wang; Haichang Huang; Jiugang Zhao; Ravinder K Kaundal; Ming Yu; Ritu Kushwaha; Barbara H Chaiyachati; Elizabeth Deerhake; Tian Chi
Journal:  Development       Date:  2013-01-16       Impact factor: 6.868

6.  Loss of an Igκ gene enhancer in mature B cells results in rapid gene silencing and partial reversible dedifferentiation.

Authors:  Xiaorong Zhou; Yougui Xiang; Xiaoling Ding; William T Garrard
Journal:  Mol Cell Biol       Date:  2013-03-18       Impact factor: 4.272

Review 7.  CD4-CD8 differentiation in the thymus: connecting circuits and building memories.

Authors:  Yumei Xiong; Rémy Bosselut
Journal:  Curr Opin Immunol       Date:  2012-03-02       Impact factor: 7.486

Review 8.  Enhancer-promoter communication and transcriptional regulation of Igh.

Authors:  Ananda L Roy; Ranjan Sen; Robert G Roeder
Journal:  Trends Immunol       Date:  2011-08-19       Impact factor: 16.687

9.  Human tRNA genes function as chromatin insulators.

Authors:  Jesse R Raab; Jonathan Chiu; Jingchun Zhu; Sol Katzman; Sreenivasulu Kurukuti; Paul A Wade; David Haussler; Rohinton T Kamakaka
Journal:  EMBO J       Date:  2011-11-15       Impact factor: 11.598

10.  Charting the cis-regulome of activated B cells by coupling structural and functional genomics.

Authors:  Virendra K Chaudhri; Krista Dienger-Stambaugh; Zhiguo Wu; Mahesh Shrestha; Harinder Singh
Journal:  Nat Immunol       Date:  2019-12-23       Impact factor: 25.606

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