Literature DB >> 20452942

Organization of DNA replication.

Vadim O Chagin1, Jeffrey H Stear, M Cristina Cardoso.   

Abstract

The discovery of the DNA double helix structure half a century ago immediately suggested a mechanism for its duplication by semi-conservative copying of the nucleotide sequence into two DNA daughter strands. Shortly after, a second fundamental step toward the elucidation of the mechanism of DNA replication was taken with the isolation of the first enzyme able to polymerize DNA from a template. In the subsequent years, the basic mechanism of DNA replication and its enzymatic machinery components were elucidated, mostly through genetic approaches and in vitro biochemistry. Most recently, the spatial and temporal organization of the DNA replication process in vivo within the context of chromatin and inside the intact cell are finally beginning to be elucidated. On the one hand, recent advances in genome-wide high throughput techniques are providing a new wave of information on the progression of genome replication at high spatial resolution. On the other hand, novel super-resolution microscopy techniques are just starting to give us the first glimpses of how DNA replication is organized within the context of single intact cells with high spatial resolution. The integration of these data with time lapse microscopy analysis will give us the ability to film and dissect the replication of the genome in situ and in real time.

Mesh:

Year:  2010        PMID: 20452942      PMCID: PMC2845211          DOI: 10.1101/cshperspect.a000737

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  84 in total

1.  Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos.

Authors:  I Lucas; M Chevrier-Miller; J M Sogo; O Hyrien
Journal:  J Mol Biol       Date:  2000-02-25       Impact factor: 5.469

2.  Replication timing of extremely large genes on human chromosomes 11q and 21q.

Authors:  Yoshihisa Watanabe; Kiyoshi Shibata; Toshimichi Ikemura; Masato Maekawa
Journal:  Gene       Date:  2008-06-22       Impact factor: 3.688

3.  Global organization of replication time zones of the mouse genome.

Authors:  Shlomit Farkash-Amar; Doron Lipson; Andreas Polten; Alon Goren; Charles Helmstetter; Zohar Yakhini; Itamar Simon
Journal:  Genome Res       Date:  2008-07-30       Impact factor: 9.043

4.  Stochastic hybrid modeling of DNA replication across a complete genome.

Authors:  J Lygeros; K Koutroumpas; S Dimopoulos; I Legouras; P Kouretas; C Heichinger; P Nurse; Z Lygerou
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-19       Impact factor: 11.205

5.  Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Authors:  Jean-Charles Cadoret; Françoise Meisch; Vahideh Hassan-Zadeh; Isabelle Luyten; Claire Guillet; Laurent Duret; Hadi Quesneville; Marie-Noëlle Prioleau
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

6.  The HP1-p150/CAF-1 interaction is required for pericentric heterochromatin replication and S-phase progression in mouse cells.

Authors:  Jean-Pierre Quivy; Annabelle Gérard; Adam J L Cook; Danièle Roche; Geneviève Almouzni
Journal:  Nat Struct Mol Biol       Date:  2008-09       Impact factor: 15.369

7.  The meaning of gene positioning.

Authors:  Takumi Takizawa; Karen J Meaburn; Tom Misteli
Journal:  Cell       Date:  2008-10-03       Impact factor: 41.582

Review 8.  A revisionist replicon model for higher eukaryotic genomes.

Authors:  J L Hamlin; L D Mesner; O Lar; R Torres; S V Chodaparambil; L Wang
Journal:  J Cell Biochem       Date:  2008-10-01       Impact factor: 4.429

9.  Relationships between replication timing and GC content of cancer-related genes on human chromosomes 11q and 21q.

Authors:  Yoshihisa Watanabe; Takashi Abe; Toshimichi Ikemura; Masato Maekawa
Journal:  Gene       Date:  2008-12-14       Impact factor: 3.688

10.  Global reorganization of replication domains during embryonic stem cell differentiation.

Authors:  Ichiro Hiratani; Tyrone Ryba; Mari Itoh; Tomoki Yokochi; Michaela Schwaiger; Chia-Wei Chang; Yung Lyou; Tim M Townes; Dirk Schübeler; David M Gilbert
Journal:  PLoS Biol       Date:  2008-10-07       Impact factor: 8.029

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  28 in total

1.  Activation of new replication foci under conditions of replication stress.

Authors:  P Rybak; A Waligórska; Ł Bujnowicz; A Hoang; J W Dobrucki
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 2.  Transcriptional regulation at the yeast nuclear envelope.

Authors:  Babett Steglich; Shelley Sazer; Karl Ekwall
Journal:  Nucleus       Date:  2013-09-06       Impact factor: 4.197

Review 3.  [Regulation of DNA replication timing].

Authors:  T D Kolesnikova
Journal:  Mol Biol (Mosk)       Date:  2013 Jan-Feb

4.  Multi-step loading of human minichromosome maintenance proteins in live human cells.

Authors:  Ioanna-Eleni Symeonidou; Panagiotis Kotsantis; Vassilis Roukos; Maria-Anna Rapsomaniki; Hernán E Grecco; Philippe Bastiaens; Stavros Taraviras; Zoi Lygerou
Journal:  J Biol Chem       Date:  2013-10-24       Impact factor: 5.157

5.  Snapshots of archaeal DNA replication and repair in living cells using super-resolution imaging.

Authors:  Floriane Delpech; Yoann Collien; Pierre Mahou; Emmanuel Beaurepaire; Hannu Myllykallio; Roxane Lestini
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

6.  A Simple Marker-Assisted 3D Nanometer Drift Correction Method for Superresolution Microscopy.

Authors:  Hongqiang Ma; Jianquan Xu; Jingyi Jin; Yi Huang; Yang Liu
Journal:  Biophys J       Date:  2017-05-23       Impact factor: 4.033

Review 7.  Replication timing and its emergence from stochastic processes.

Authors:  John Bechhoefer; Nicholas Rhind
Journal:  Trends Genet       Date:  2012-04-18       Impact factor: 11.639

8.  Proliferating cell nuclear antigen is a novel inhibitory ligand for the natural cytotoxicity receptor NKp44.

Authors:  Benyamin Rosental; Michael Brusilovsky; Uzi Hadad; Dafna Oz; Michael Y Appel; Fabian Afergan; Rami Yossef; Lior Ann Rosenberg; Amir Aharoni; Adelheid Cerwenka; Kerry S Campbell; Alex Braiman; Angel Porgador
Journal:  J Immunol       Date:  2011-10-21       Impact factor: 5.422

9.  Superresolution imaging reveals spatiotemporal propagation of human replication foci mediated by CTCF-organized chromatin structures.

Authors:  Qian Peter Su; Ziqing Winston Zhao; Luming Meng; Miao Ding; Weiwei Zhang; Yongzheng Li; Mengzhu Liu; Rongqin Li; Yi-Qin Gao; Xiaoliang Sunney Xie; Yujie Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-15       Impact factor: 11.205

10.  Species-specific typing of DNA based on palindrome frequency patterns.

Authors:  Estelle Lamprea-Burgunder; Philipp Ludin; Pascal Mäser
Journal:  DNA Res       Date:  2011-03-23       Impact factor: 4.458

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